Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2562 ATGCAGAGCAGCAGCAGGGGATCATCGATGGCTTATCCATCGTTCCGCATCCCTGCACTTCTCATCTCCATGTTCGCCACGTTCGCTTCCTTCTACGTCGCCGGAAGGTTATGGCAGGACTCGCAGAACAGGGTTTATCTCATCAAACAGCTCGACAGGATCACTGGCCAGGGACAATCTGCGATATCAGTAGAAGATACCTTGAAGATCATAACCTGCAGGGAACAGCACAAGAAGCTCGATTCCCTTGAGATGGAACTTGCTGCGGCTAGGCAAGAGGGTTTTGTTTCGAAGCGATTGCTTGAGACCAATGGGACTTACTCTGAGGGAAGGCCTTTGGTCATGATAGGTATACTCACAACATTTGGCCGCCAGAAGAATAGGGACGCCATTCGCAATGCCTGGATGGGAAGTGGTGCAGCTTTGAAGAAACTGGAGGATGGAAAGGGCATTGTTGCACGATTTGTTATTGGGAGAAGTGAAAATCGTGGGAACAATCAGGATAAGGATATTGATCGTGAGAATAGGCTGACTAATGACTTCCTAATTCTTGATGATCACGTGGAATCAAACGAGGGGCTCCCAAATAAGGCTAAATTGTTTTTTGCTTATGCTGCAGATAAATGGGATGCTGAGTTTTTTGCTAAAGTAAATGATGATGTTTATGTAAATATTGATGCCTTGGGTTCTACACTGGCAACTCATTTGGACAAACCTCGTGTTTACATGGGATGCATGAAATCAGGAGAAGTTTTCTCTGAACCGAAACATAGATGGTATGAACCAGAATGGTGGAAATTTGGCGACAAGAAATCATATTTTCGTCATGCATCAGGAGAGATGTATGTCATATCACGAGCCTTGGCTAAATTTGTATCAATAAACAGATTTGTTCTCCGCACCTATGCCCACGACGATGTTAGTGCTGGATCCTGGTTTATTGGTCTTGATGTGAAGCATGTTGATGAATCAAAGTTTTGTTGCTCATCTTGGTCAACAGGTGCTATCTGTGCGGGTGTTTGA 1023 0.4477 MQSSSRGSSMAYPSFRIPALLISMFATFASFYVAGRLWQDSQNRVYLIKQLDRITGQGQSAISVEDTLKIITCREQHKKLDSLEMELAAARQEGFVSKRLLETNGTYSEGRPLVMIGILTTFGRQKNRDAIRNAWMGSGAALKKLEDGKGIVARFVIGRSENRGNNQDKDIDRENRLTNDFLILDDHVESNEGLPNKAKLFFAYAADKWDAEFFAKVNDDVYVNIDALGSTLATHLDKPRVYMGCMKSGEVFSEPKHRWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFVSINRFVLRTYAHDDVSAGSWFIGLDVKHVDESKFCCSSWSTGAICAGV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2562 340 Coils Coil 73 93 - -
Amo17g2562 340 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT1 6 334 - -
Amo17g2562 340 Pfam Domain of unknown function (DUF4094) 19 92 IPR025298 -
Amo17g2562 340 Pfam Galactosyltransferase 127 322 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo17g2562 340 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 334 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo17g2562 340 Gene3D - 109 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2562 Amo-Chr17 124452962 124455587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2562 20 340 Glycosyltransferase AT5G53340 71.651 1.90e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2562 K20854 - gmx:100779561 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0599 08 10812348 10815518 Amo17g2562 17 124452962 124455587 hybridization