Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2554 ATGGTGGATTCAGAACGAGTCCAAAATCCATGGATGGCTTCCTCTTCCGACCAAGTTGCTTCAATTTCACAAGCTGAATTGAGTGCTCAAGCTCCGTTGTTGCTCGAATCTCCTTCTCTTCAGCCTCCGCCGTCGCCGCCGCAATCGTCTGACGCTAACAAATTGGGAATTGGCGAACGAGCTTTCTCTGCCGCAGGCGCCGCCTTCATCTCCGCCATTATTGTTAATCCCCTTGATGTTGCCAAGACAAGGTTGCAAGCACAAGCCGCAGGGGTGGCTTATTCTCATCGCCTCAGTAATATGACCACTCGTATGGCTTGTTTTGGCCCTAACATGATGTTTGCTGATTTAAGATGTTCTCCTTCGTGTTCCCGGGCTGGAATCCATGGCACAATTTCGCTTTGTCCTCCTGAGTGTTTTCGGTACAAGGGAACATTTGATGTCTTGTATAAAGTTGTACAACAGGAAGGATTTTCAAGGCTGTGGAGGGGTACAAATGCAGGCCTGGCACTTGCTATACCAACCGTGGGAATTTACCTTCCATGCTATGACTTGTTCCTCAACTGGTTGGAGGAATTCACTGCAAGAAGTGCTCCAATGACAACTCCATATGTACCTTTAGTGGCTGGTTCATTGTCACGCTCCCTTGCATGTGCAACTTGTTATCCTATTGAACTCGCCAGAACTCGTATGCAGGCGTTTCAAGAGACTCAAGTTGGTAAAAAGCCTCCTGGAGTTTTTCAGACTCTTGTAGGTGTTGTTTCACATGTCAAGGGTTCAAATAGTCCTCCTCAGAACACCTGGCAAGGTTATCGTGTTCTGTGGACTGGTATGGGAGCACAACTTGCCCGAGATGTACCCTTCTCTGCAATTTGTTGGTCAATTCTAGAACCTACTAGAAGAAAACTCCTTAGCCTGGTAGGGGGTGATGACGCCGATGCATTGGGTGTTCTTGGGGCRAATTTTTCAGCTGGTTTTGTTGCTGGAACTCTAGCAGCAGGAGCTACATGTCCGCTAGATGTAGCGAAAACTCGAAGGCAAATAGAGAGGGATCCGGTGAGGCAACTGAGAATGACCACAAGACAAACATTGATGGAAGTTTGGAGAGATGGAGGCATGAAGGGACTGTTCACAGGTTTAGGTCCACGAATTGGAAGAGCTGGCCCCTCCGTTGGAATAGTGGTTTCATTCTATGAAGTTGTCAAGTTTGCTCTTCATTCACAACGCTAA 1230 0.4756 MVDSERVQNPWMASSSDQVASISQAELSAQAPLLLESPSLQPPPSPPQSSDANKLGIGERAFSAAGAAFISAIIVNPLDVAKTRLQAQAAGVAYSHRLSNMTTRMACFGPNMMFADLRCSPSCSRAGIHGTISLCPPECFRYKGTFDVLYKVVQQEGFSRLWRGTNAGLALAIPTVGIYLPCYDLFLNWLEEFTARSAPMTTPYVPLVAGSLSRSLACATCYPIELARTRMQAFQETQVGKKPPGVFQTLVGVVSHVKGSNSPPQNTWQGYRVLWTGMGAQLARDVPFSAICWSILEPTRRKLLSLVGGDDADALGVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDPVRQLRMTTRQTLMEVWRDGGMKGLFTGLGPRIGRAGPSVGIVVSFYEVVKFALHSQR* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2554 409 Gene3D Mitochondrial carrier domain 131 409 IPR023395 -
Amo17g2554 409 PANTHER FI19922P1-RELATED 1 408 IPR045315 GO:1990542
Amo17g2554 409 PANTHER BNACNNG35730D PROTEIN 1 408 - -
Amo17g2554 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 316 404 IPR018108 -
Amo17g2554 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 201 302 IPR018108 -
Amo17g2554 409 MobiDBLite consensus disorder prediction 33 54 - -
Amo17g2554 409 Gene3D Mitochondrial carrier domain 34 115 IPR023395 -
Amo17g2554 409 Pfam Mitochondrial carrier protein 320 406 IPR018108 -
Amo17g2554 409 Pfam Mitochondrial carrier protein 55 190 IPR018108 -
Amo17g2554 409 Pfam Mitochondrial carrier protein 203 303 IPR018108 -
Amo17g2554 409 SUPERFAMILY Mitochondrial carrier 59 400 IPR023395 -
Amo17g2554 409 ProSiteProfiles Solute carrier (Solcar) repeat profile. 55 189 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2554 Amo-Chr17 124282225 124286004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2554 269 409 Organic Solute Cotransporters AT3G55640 30.556 5.70e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2554 K15119 - gmx:100810960 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0524 08 9592034 9595718 Amo17g2554 17 124282225 124286004 hybridization