Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2474 ATGCCAACACCAGCTTTCACTTTCTACTCTACAATGTCAGCTTCAGCTTCGTTTCTTGCTCCGTCCCCCTCTTTCGCTCCATTCAGGGGTAGCAAAGAGGTTCCACGTATGTTTTCAGTGTCTGACCTGAAAAGCATAGCATGCAACAAAAAGGAGAATCGCACTTCAAAGCTTTACATTATACCCATCACCACTGTTACTCGCTTTTGTGCCTCAAGAGCTTCACTTGAGTCCTTGCACTTTGCTGACACTAATGCTAATCAAAATCACAGAATAAACGAATTTGAGAATGAGTTGAACGAGTTCTTTGATGAAGTGAAAACAATGATTAGAATGGGAAAAAGAGATGATGCTCTTGACCTACTTAATGCCGGCTCTAAAGGCATTCAAGAAGCTGCAATTCTGGATGTCTTAGCGCTGGGTTATGTGGCTGTTGGAGACCTAAAAACTGTTGCTTCTCTGTTGAATGTGATGAGAAAAGTGATTGACAATTTGAAGGATGACACACAACATCTAGATTTGATACTTACGCATATGGGAAGTATGTATTCAACATTGAGCAAGTTTGGAAAATCACTGGACACGTATCAAAGGGCTTTCAACATTATGGAAAGGACCTATGGTAAGGACAGCCCTTTTCTTGTCACACCCTATTTGGCTATGGCAAAGGTTCTTGGTTCAACTGGAAAAGCAACAAAAGCCATAGAGAAATACCAGTGTGCAATAACTATTTTGGAGTCTAAGAGAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTGGTCTTGGCAATCTTTTACTGAAAGAAAGAAGAGTCAACGACGCAGAAACTCATTTTACTAGGGTTCTCGACATATACACAAAGTCATATGGACAAAATGATGGAAGAATTGGATTGGCCATGAGTTCCCTTGCCCAAGTTAAGTGTGCTCAAGGGAAGTCAGATGAAGCAATCAATTTGTATGAACATGCACTTCATGTCATGAAAGATTCCAATTACTTGTCGCCAGATGACAGCATCATGGAAAAGATGAGGGTAGATCTTGCTGAGTTGCTTCATGCTGTCGGGAGAGCACAAGAAGGCAGAGAATTATTAGAGGAATGCTTATTAATCACAGAGAGGCACAAAGGAAAAGGTCACCCCGGCTTAGTGACACACATGATAAATCTTGCAACTTCATATTCCCAATCGAAGAATTATGCAGAGGCCGAGCACTTGTTGAGAAGAGTTTGGAAATAA 1242 0.4106 MPTPAFTFYSTMSASASFLAPSPSFAPFRGSKEVPRMFSVSDLKSIACNKKENRTSKLYIIPITTVTRFCASRASLESLHFADTNANQNHRINEFENELNEFFDEVKTMIRMGKRDDALDLLNAGSKGIQEAAILDVLALGYVAVGDLKTVASLLNVMRKVIDNLKDDTQHLDLILTHMGSMYSTLSKFGKSLDTYQRAFNIMERTYGKDSPFLVTPYLAMAKVLGSTGKATKAIEKYQCAITILESKRGAESKDLVVPLLGLGNLLLKERRVNDAETHFTRVLDIYTKSYGQNDGRIGLAMSSLAQVKCAQGKSDEAINLYEHALHVMKDSNYLSPDDSIMEKMRVDLAELLHAVGRAQEGRELLEECLLITERHKGKGHPGLVTHMINLATSYSQSKNYAEAEHLLRRVWK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2474 413 Pfam Tetratricopeptide repeat 261 328 - -
Amo17g2474 413 Pfam Tetratricopeptide repeat 344 410 - -
Amo17g2474 413 Pfam Tetratricopeptide repeat 175 247 - -
Amo17g2474 413 Gene3D Tetratricopeptide repeat domain 337 413 IPR011990 GO:0005515
Amo17g2474 413 Gene3D Tetratricopeptide repeat domain 85 336 IPR011990 GO:0005515
Amo17g2474 413 SMART tpr_5 215 248 IPR019734 GO:0005515
Amo17g2474 413 SMART tpr_5 173 206 IPR019734 GO:0005515
Amo17g2474 413 SMART tpr_5 299 332 IPR019734 GO:0005515
Amo17g2474 413 SMART tpr_5 257 290 IPR019734 GO:0005515
Amo17g2474 413 Coils Coil 85 112 - -
Amo17g2474 413 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 83 410 - -
Amo17g2474 413 SUPERFAMILY TPR-like 176 412 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2474 Amo-Chr17 122097059 122100480 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2474 - - aprc:113852595 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2474 17 122097059 122100480 Amo17g2474 17 122097059 122100480 ECH