Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2473 ATGGATAGGTCTAGATCTAAGAGGAACTACTACTATGACCAGGACTATGATTCTGACACCCTCGCTAGGACCAGGCCCCGCTATAACCACCACTATAACAACGTTCCAGTTCACCGCCACCGCGGAGGAGGTGGTGGTGGTGGCGGCGGCGGCGGAGGACGCCAGTTTAAGACTCAGGACTCGCCGTTGACGGTTACCACCAGCTACCGCATTCTGTGCCACGATTTGAAGGCCGGCGGCGTCATCGGGAAGTCTGGCAGCATAATAAAGTCCATACGGCAGCACACCGGCGCATGGATCAACGTCCACGAGCTGATCCCCGGCGATGAGGAGCGGATCATCGAGATTTCCGACACTCGCCGCCGCGACCCTGAGGGGAGAATGCCGTCGTTTTCGCCGGCGCAGGAGGCGCTCCTCATGATCCACGACAGGATCCTGGAGAGCGACGCTGCGTTCGGGGTCGGGGAGGAGGATGAGGAGTACGGCCTCCCTGGCGGAGGAGGCGGAAGAGGTGGTGGTGGTGGCGGGAACAGTCGTGTGGCGTCGAGATTGGTGGTATCGAGAATGCATGTAGGGTGTTTGTTGGGAAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACAAAGACACAAATTAGGATACTCCCTAGAGATCACAATCTACCCCGTTGTGTTTCCATGGCAGAAGAGATTGTTCAGGTAGTAGGCGACGTAAATGCCGTGAAGAATGCTATAGTAATTATATCGTCACGGTTAAGGGAGAGCCAGCATCGTGACCGTGGTCATTTCCATGGACGTGCACATTCACCTGAGCGATTTTTCCCTCCCGACGATGATTATGTTCCTCATATGACTGGTGGATCTCGTAGATCAGCTGTAGACGGAGCTAATTTTGGTTCACGAATGTCTAACACCAATGCCAGAAACAATAACCAACCCCAATTGGGTAATTACGGAATGGAGCCAGGGCCTGCTCCCATGGTTGATGAAGCACAGCCCCTGTATGGAGAGGAGCTTATTTTCCGTATACTTTGTCCAGTTGAGAAAGTTGATCGCATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAAAATGAAGTTGGGGTAGATGTAAAGGTGGCCGAACCTATTGGTGGTTCAGATGAACAGATAATAATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCACAGGAAGCCTTGTTGCATATACAAACTCGTATTGTTGATCTTGTTCTAGATAAGGACAATACTATAACCACCAGGCTCGTCGTCCCATCTAGCGATATTGAATGCATAGATGGAAAAGAGGCCTCGCTATCAGAAATAAGGAGGTTGACCGGTGCAAACATTCAGATTCTGCCTAGAGAAGAATTACCTCTTTGTGTTGGAAGAACTGATGAGCTAGTACAGATTGTAGGAGAGATAAAGGCAGCACGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTTTATAAGGACTTCTTTTCAAGAGATACAATGCCACCGTTGACCTCCTTACCGGGCATTGAGGCATCTTCTTCTAATAATATGGCTTCAGCTACTGAAGCTCCTGCAGCCTATCAGAATGTGCTAACTGCACCAGGGCCCTTTCCATCAAAGGAATCTGGAGGGTCTAGCACCGAGGCAGGAAAGCAGAAAGAGACGGACCGCCGCGAAGATGTGCCGAGTGGTTTAAATAGGATTGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTCTACCAGAGTATGCAGTTCCCAAGCTTATAGCAAAATCCAAAAGCAAGCTTGTTCAAATAAGTGAGTTGTCAGGAGCCAACGTAACGCTTGTAGAGGATAGACCAGATGCGACACAGAAGATTATTCAGATATCCGGTACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAAGATGGCCCTTGA 1983 0.4942 MDRSRSKRNYYYDQDYDSDTLARTRPRYNHHYNNVPVHRHRGGGGGGGGGGGGRQFKTQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLMIHDRILESDAAFGVGEEDEEYGLPGGGGGRGGGGGGNSRVASRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMAEEIVQVVGDVNAVKNAIVIISSRLRESQHRDRGHFHGRAHSPERFFPPDDDYVPHMTGGSRRSAVDGANFGSRMSNTNARNNNQPQLGNYGMEPGPAPMVDEAQPLYGEELIFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVKVAEPIGGSDEQIIIITSEEGPDDELFPAQEALLHIQTRIVDLVLDKDNTITTRLVVPSSDIECIDGKEASLSEIRRLTGANIQILPREELPLCVGRTDELVQIVGEIKAARDAVVEVTSRLRSYFYKDFFSRDTMPPLTSLPGIEASSSNNMASATEAPAAYQNVLTAPGPFPSKESGGSSTEAGKQKETDRREDVPSGLNRIAVPLVTRSTLEVVLPEYAVPKLIAKSKSKLVQISELSGANVTLVEDRPDATQKIIQISGTPEQAERAQSLLQGFILSTQEDGP* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2473 660 Gene3D - 338 499 - -
Amo17g2473 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 416 503 IPR036612 GO:0003723
Amo17g2473 660 CDD PCBP_like_KH 68 142 - -
Amo17g2473 660 MobiDBLite consensus disorder prediction 32 56 - -
Amo17g2473 660 MobiDBLite consensus disorder prediction 539 571 - -
Amo17g2473 660 MobiDBLite consensus disorder prediction 304 318 - -
Amo17g2473 660 Gene3D K Homology domain, type 1 583 655 IPR036612 GO:0003723
Amo17g2473 660 ProSiteProfiles Type-1 KH domain profile. 584 648 - -
Amo17g2473 660 ProSiteProfiles Type-1 KH domain profile. 339 406 - -
Amo17g2473 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 64 117 IPR036612 GO:0003723
Amo17g2473 660 Gene3D K Homology domain, type 1 179 258 IPR036612 GO:0003723
Amo17g2473 660 ProSiteProfiles Type-1 KH domain profile. 66 138 - -
Amo17g2473 660 MobiDBLite consensus disorder prediction 304 324 - -
Amo17g2473 660 Gene3D K Homology domain, type 1 63 178 IPR036612 GO:0003723
Amo17g2473 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 577 654 IPR036612 GO:0003723
Amo17g2473 660 SMART kh_6 422 496 IPR004087 GO:0003676
Amo17g2473 660 SMART kh_6 65 146 IPR004087 GO:0003676
Amo17g2473 660 SMART kh_6 338 411 IPR004087 GO:0003676
Amo17g2473 660 SMART kh_6 583 653 IPR004087 GO:0003676
Amo17g2473 660 SMART kh_6 178 254 IPR004087 GO:0003676
Amo17g2473 660 CDD KH-I 586 649 - -
Amo17g2473 660 MobiDBLite consensus disorder prediction 259 278 - -
Amo17g2473 660 Pfam KH domain 586 649 IPR004088 GO:0003723
Amo17g2473 660 Pfam KH domain 69 117 IPR004088 GO:0003723
Amo17g2473 660 Pfam KH domain 425 490 IPR004088 GO:0003723
Amo17g2473 660 Pfam KH domain 183 250 IPR004088 GO:0003723
Amo17g2473 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 176 259 IPR036612 GO:0003723
Amo17g2473 660 CDD PCBP_like_KH 183 250 - -
Amo17g2473 660 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 539 - -
Amo17g2473 660 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 331 397 IPR036612 GO:0003723
Amo17g2473 660 ProSiteProfiles Type-1 KH domain profile. 179 249 - -
Amo17g2473 660 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2473 Amo-Chr17 122090727 122095901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2473 K21444 - gmx:100804167 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2473 17 122090727 122095901 Amo17g2473 17 122090727 122095901 ECH