Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2435 ATGATCTCATCGAGTTACTTGAACAGCAACAACGACAGTCCCTTCATCTCCGGTGGCAGTGGCGGCGGTGGCGGCAGCGGCAGGGGCAGGCTATCGTTAATCATGGCTGCGGTGGCCGCGCCCTCCACTCCGGCGGTGGTGTTCACGGCCTTGGCTGGCCTCGCTCTCGTCGCTGTCATCTTCTACGGTGCTAGTAGAGGTCGTCTTAAATCACCATGGTCACGTAGGAGAAGAAAACATGCCCTTTCACCTCAGCAGTGGAAGAGCTTGTTTACACTGGACGGAAAACTCCGTGATGGTGGAATTAAGTTCCTGAAAAGAGTTCGCAGTGGAGGTGTTGATACTAGTATCAGGGCTGAAGTTTGGCCATTCCTACTTGGAGTTTATGACTTGGACAGTACCAAAGAAGAGAGAGATATCATAAGAACTCGAAATAGAAAGGAATATGAGAAACTCCGCAGGCGATGCCGCCAACTTCTAAAGCAATGCAATGAGAGCTTTAAGTTAAACGAAATTGGTGAAATAAGCTATGAAGGAGATGGTGAGAGTCTTATTCAAGCTTCTGGTTCTCCTAGTTCTGAAGATGCAACGAGTGCTAGGCAATCCCTTTCCAGTGAGGAAAGGAGCCCAGATGTTGAATATTCAGATGATCCGTCTAGTGCCCTGTTGGAAGGGAATGATGTCAACAACGTTGATGCAGCATCGGATACTGATTCTACTGATTCAGATTCCTCTGATGGTCCTGAGGTAATTCAGACTTCTCCTTCTAATGAATTTCAGGAGGATAACACTTCCAAGACAGCTTCTACAGAAATTTCTTCATCCCAAATGAATGGCCCATCAAGACTACCAAACAATGAAGATTTTGCCACTTGGCAACGGATCATCCGACTAGATGCAGTACGTGCCAATGCAGAATGGATACCATTTTCACCTTGTCAAGCTGTTATACCAGAGAGCAGGGCAATCCGATCTGCTGAGGCTGTTGGATTGAAGGAATATGGGCACTTAGAACCCAATAGAATTTTCCATGCTGCCCGATTGGTTGCTATTCTTGAAGCATATGCATTATATGATCCAGAAATCGGCTACTGCCAGGGTATGAGCGATCTGCTGTCTCCAATAGTTAGTGTTATATCAGAAGATCACGAGGCCTTCTGGTGCTTTGTTGGATTCATGAAGAAGGCACGCCAGAACTTTAGGCTTGATGAGGTGGGTATCAGGAGGCAACTTGATATAGTAGCAAAGATAATCAAGTTCAAGGATTCTCACTTGTTCAGACATCTGGAGAAGCTTCAGGCCGATGATTGCTTTTTTGTGTACAGGATGGTGGTTGTGTTGTTTAGAAGGGAATTGACATTTGAACAGACTCTCTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGGGCCGGCATTGGGAAATCAGCATGGAGCAGAATCAGGCAGCGTGCTCCACCAACAGATGATTTATTGCTGTATGCAATAGCGGCTTCAGTGTTGCAGAGGAGGAAATTGATTATTGAGAAGTATAGCAGCATGGATGAGATCATCAAGGAATGCAATGGTATGGCTGGACACCTTGATATTTGGAAGCTGCTGGATGATGCGCACAATTTGGTCGTCACTCTTCATGATAAAATGAAACTAGAGACATCATTTCGATGA 1674 0.4594 MISSSYLNSNNDSPFISGGSGGGGGSGRGRLSLIMAAVAAPSTPAVVFTALAGLALVAVIFYGASRGRLKSPWSRRRRKHALSPQQWKSLFTLDGKLRDGGIKFLKRVRSGGVDTSIRAEVWPFLLGVYDLDSTKEERDIIRTRNRKEYEKLRRRCRQLLKQCNESFKLNEIGEISYEGDGESLIQASGSPSSEDATSARQSLSSEERSPDVEYSDDPSSALLEGNDVNNVDAASDTDSTDSDSSDGPEVIQTSPSNEFQEDNTSKTASTEISSSQMNGPSRLPNNEDFATWQRIIRLDAVRANAEWIPFSPCQAVIPESRAIRSAEAVGLKEYGHLEPNRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVISEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDSHLFRHLEKLQADDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQRRKLIIEKYSSMDEIIKECNGMAGHLDIWKLLDDAHNLVVTLHDKMKLETSFR* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2435 557 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 86 428 IPR035969 -
Amo17g2435 557 MobiDBLite consensus disorder prediction 183 205 - -
Amo17g2435 557 ProSiteProfiles TBC/rab GAP domain profile. 112 468 IPR000195 -
Amo17g2435 557 Coils Coil 142 162 - -
Amo17g2435 557 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 268 400 - -
Amo17g2435 557 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 19 549 - -
Amo17g2435 557 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 19 549 - -
Amo17g2435 557 MobiDBLite consensus disorder prediction 182 286 - -
Amo17g2435 557 SMART tbc_4 109 494 IPR000195 -
Amo17g2435 557 MobiDBLite consensus disorder prediction 222 286 - -
Amo17g2435 557 Gene3D - 404 551 - -
Amo17g2435 557 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 405 543 IPR035969 -
Amo17g2435 557 Pfam Rab-GTPase-TBC domain 347 467 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2435 Amo-Chr17 121229424 121234189 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2435 - - gmx:100793557 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2435 17 121229424 121234189 Amo17g2435 17 121229424 121234189 ECH