Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2395 ATGAATGTGGCTTCCAGGGTGGGGTGCGCCATAACCAGAACCAGAACTGCACCTAATCTATCATTCTTTCACTCTCTTCTCCAAAACGACAACGCCACGTGTCCTCTTGTCATCTTTCGTCAACTCCTAGATGCTAATGCCAACCCCAACGATCTCACTTTCTCATTGCTCATCAAATCGTGCGTCTCTTCTTCTTCTTCACATTCTTACGCTCTATCTTCTGCGAGACTTCAAGTAACACAGATTCAAAGTCAGTTCCTCAAACGGGGTATCAACCATTTTGTCTATGTATATACTGCTCTTATTGATCTCTGCATGAAACTTGGGTTTACCACTCATGCACACCAACTGTTTGAGGATATGACTTACCGAGATGTTGTTTCTTGGAACGTATTGATTTGTGGGTATTCACAAAATGGCCATCCTTATGATGCTCTACAATTCTTTATACACATGATTAGACATGGTTTCACACCTAATCAAACCACCATGGCTAGTTTGCTACCTTCTTGTGGTCACAATGGGCTAATTCTTCAGGGGAGATCCATTCATGGGTTTGGAATCAAAGCTGGCCTTGCTTCGGACCCTCAATTGAGTAATGCCCTTACCTCAATGTATGCTAAATGTGATGATTTGGGAGCATCCCAACTCTTGTTTGAAGAAATGGGCGAGAGAAACGTTGTCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTTTCTCTGACAAGGCACTCTTTTGCTTCAAAGAGATGCTAAAGGAATGTTTGAATCCCAGCCCAGTGACTATGATGAACCTTCTTTCAGCAAATGTTGATCCTGAAACTGTCCATTGTTATATTACCAAATGTGGCTTAATCAATAATGATTCTGTCGTTACCTCGCTGGTTTGTCTATATGCAAAACAAGGGTTCACAGATATAGCGAAATTGCTTTACAAGTGCTTTCCCTCAAAACGCCTGATTTGCTTAACTGCTATAGTCTCTAGCTATTCTGAAAAAGGTGATATTGACTCCGCTGTTGAGTGTTTTATACAAACTCTGCAGTTAGACATAAAACCAGATGCAGTTGCCTTGATTACTGTCCTTCATGGAGTTAATAATCCTTCTCATTTTGCTATTGGGTGTGCTTTCCATGGTTATGCTTTGAAAAGTGGGCTGACCACCGACTCTTTAGTTGCAAACGGGCTGATAAGCATGTATTCTAGATTCGATGAGATAGAAGCTGCGTTGTCGTTGTTTACTGATATGAGTGAAAAACCGCTGATCACTTGGAATTCTGTGATATCCGGCTGTGTGCAGGCTGGAAAATCAAGTGATGCCATGCTGTTGTTCTGCAAAATGAACGCATGTCGACAAAAATCAGATGCAATTACTATAGCTAGTTTACTATCCGGGTGTTGCCAGCTTGGGGATCTTCGAATTGGTGAGACACTGCATGGCTATGTCCTGAGGAACGATGTGGAATTGGAAGAGTTTACAGGAACTGCTCTGATAGATATGTATACTAAGTGTGGAAGATTAGACTACGCTGAAAAGGTATTTCATAGCATAAATGATCCATGTTTGGCAACATGGAACTCTATTATATCCGGTTATAGTTTATATGGACTTGAACATAAATCTTTCAGTTGTTATTCTAAACTGCAAGAGCAAGGCCTAAAACCGGATAAGATAACCTTCTTGGGAGTTTTGGCAGCATGCATCCATGGGGGACTTGTTTGTGAAGGAATAGAATACTTCCGTATCATGACAGAAGAGCATAAATTGATGCCAGGCTTGCAACATTATGCTTGCATTGTTGGTCTACTGGGGCGAGCAAGCTTCTTTGAGGAAGCAATTGAGTTCATCAACAATATGAAAATTCGGCCTGATTCTGCTGTCTGGGGAGCCTTGTTAAGTGCTTGTTGCATCCAACAAGAGATTAGGCTTGGAGAATGTTTGGCTAAAAAACTATTTTTCTTGAATAACAAAAATGGTGGATTTTATGTATTGATGTCAAATCTTTATGCAATTGTTGGGAGGTGGGGTGATGTAGCAAGGGTGAGGGATATGATGAGAGACAGTGGAGGAGATGGCTGTTCAGGAGTTAGTGTTATTGAAGTGGCATCCCTCCATCACATGAATAACAACTTAGTGCTAAATGAAGCCTATTTGAATACAAGTAACTGGCAACATTTATGTCTATATTAA 2196 0.4103 MNVASRVGCAITRTRTAPNLSFFHSLLQNDNATCPLVIFRQLLDANANPNDLTFSLLIKSCVSSSSSHSYALSSARLQVTQIQSQFLKRGINHFVYVYTALIDLCMKLGFTTHAHQLFEDMTYRDVVSWNVLICGYSQNGHPYDALQFFIHMIRHGFTPNQTTMASLLPSCGHNGLILQGRSIHGFGIKAGLASDPQLSNALTSMYAKCDDLGASQLLFEEMGERNVVSWNTMIGAYGQNGFSDKALFCFKEMLKECLNPSPVTMMNLLSANVDPETVHCYITKCGLINNDSVVTSLVCLYAKQGFTDIAKLLYKCFPSKRLICLTAIVSSYSEKGDIDSAVECFIQTLQLDIKPDAVALITVLHGVNNPSHFAIGCAFHGYALKSGLTTDSLVANGLISMYSRFDEIEAALSLFTDMSEKPLITWNSVISGCVQAGKSSDAMLLFCKMNACRQKSDAITIASLLSGCCQLGDLRIGETLHGYVLRNDVELEEFTGTALIDMYTKCGRLDYAEKVFHSINDPCLATWNSIISGYSLYGLEHKSFSCYSKLQEQGLKPDKITFLGVLAACIHGGLVCEGIEYFRIMTEEHKLMPGLQHYACIVGLLGRASFFEEAIEFINNMKIRPDSAVWGALLSACCIQQEIRLGECLAKKLFFLNNKNGGFYVLMSNLYAIVGRWGDVARVRDMMRDSGGDGCSGVSVIEVASLHHMNNNLVLNEAYLNTSNWQHLCLY* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2395 731 Pfam PPR repeat family 424 470 IPR002885 -
Amo17g2395 731 Pfam PPR repeat family 124 171 IPR002885 -
Amo17g2395 731 PANTHER OS07G0578800 PROTEIN-RELATED 316 730 IPR045215 GO:0003723|GO:0009451
Amo17g2395 731 PANTHER OS07G0578800 PROTEIN-RELATED 216 315 IPR045215 GO:0003723|GO:0009451
Amo17g2395 731 PANTHER OS07G0578800 PROTEIN-RELATED 53 222 IPR045215 GO:0003723|GO:0009451
Amo17g2395 731 Pfam PPR repeat 526 555 IPR002885 -
Amo17g2395 731 Pfam PPR repeat 228 256 IPR002885 -
Amo17g2395 731 Pfam PPR repeat 497 518 IPR002885 -
Amo17g2395 731 Pfam PPR repeat 396 421 IPR002885 -
Amo17g2395 731 Pfam PPR repeat 325 346 IPR002885 -
Amo17g2395 731 TIGRFAM PPR: pentatricopeptide repeat domain 526 558 IPR002885 -
Amo17g2395 731 TIGRFAM PPR: pentatricopeptide repeat domain 424 449 IPR002885 -
Amo17g2395 731 TIGRFAM PPR: pentatricopeptide repeat domain 96 121 IPR002885 -
Amo17g2395 731 TIGRFAM PPR: pentatricopeptide repeat domain 228 261 IPR002885 -
Amo17g2395 731 TIGRFAM PPR: pentatricopeptide repeat domain 127 160 IPR002885 -
Amo17g2395 731 Gene3D Tetratricopeptide repeat domain 186 277 IPR011990 GO:0005515
Amo17g2395 731 Gene3D Tetratricopeptide repeat domain 278 370 IPR011990 GO:0005515
Amo17g2395 731 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 316 730 - -
Amo17g2395 731 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 53 222 - -
Amo17g2395 731 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 216 315 - -
Amo17g2395 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Amo17g2395 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Amo17g2395 731 Pfam E motif 642 702 IPR046848 -
Amo17g2395 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Amo17g2395 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Amo17g2395 731 Gene3D Tetratricopeptide repeat domain 24 184 IPR011990 GO:0005515
Amo17g2395 731 Gene3D Tetratricopeptide repeat domain 523 717 IPR011990 GO:0005515
Amo17g2395 731 Gene3D Tetratricopeptide repeat domain 371 522 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2395 Amo-Chr17 119864838 119867038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2395 50 708 Glycoside Hydrolase AT3G49170 30.667 1.66e-104 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2395 - - adu:107460366 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2395 17 119864838 119867038 Amo17g2395 17 119864838 119867038 ECH