Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2285 ATGGCACACGCCATTGTTTCCAAGTCCTCCAAGTGGTTATTCTCTAGCAAGACTACCTTCTTCCTCTTCTTCAAGTTAGCCTTTCCATGTTTAACTCCTCCTCCTCCTCCCACAGACACAGCATCTCAGTTAATTATGCCATCCAATTCCAACATGCACAACACAAAAGAAGATGACAAACTCAGAGACGTTTTTGATCACTTGGACGTTGACAAAGACGGCAAAGTCTCAAGCAAGGAGCTCGTGGATTATTTGGGTTCGGTAGGCGAGTCGGTGAACCATAAAGTGGCAAAGAAGATTGTGAATGAGTTTGACTCCGACGGGGATGAGTTGCTTCATTTTGGGGACTTCGTGAGACTGATGAAGCAAGAGGACAATGGCGACTTGGAAGATGTTCTAAGGAGCGCGTTTGAGATGTTCGAAGTTGAGAAAGGTTGTGGCTGCATAACACCCAAAGGGTTGCAGAACATGTTACACCAATTGGGGGAAGTTAAATCTCACCAAGAGTGCGAGGCCATGATTCGACCATTTGATCTTGATGGCAATGGATTCCTTGATTTCCATGAGTTTCAGCAAATGATGTCACCGGTTCCTTGA 597 0.4539 MAHAIVSKSSKWLFSSKTTFFLFFKLAFPCLTPPPPPTDTASQLIMPSNSNMHNTKEDDKLRDVFDHLDVDKDGKVSSKELVDYLGSVGESVNHKVAKKIVNEFDSDGDELLHFGDFVRLMKQEDNGDLEDVLRSAFEMFEVEKGCGCITPKGLQNMLHQLGEVKSHQECEAMIRPFDLDGNGFLDFHEFQQMMSPVP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2285 198 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Amo17g2285 198 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Amo17g2285 198 PANTHER CALMODULIN 20 195 - -
Amo17g2285 198 CDD EFh 60 122 IPR002048 GO:0005509
Amo17g2285 198 ProSiteProfiles EF-hand calcium-binding domain profile. 165 198 IPR002048 GO:0005509
Amo17g2285 198 SUPERFAMILY EF-hand 46 195 IPR011992 -
Amo17g2285 198 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Amo17g2285 198 Pfam EF-hand domain pair 132 195 IPR002048 GO:0005509
Amo17g2285 198 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
Amo17g2285 198 Gene3D - 126 197 - -
Amo17g2285 198 PANTHER CALCIUM BINDING PROTEIN 20 195 - -
Amo17g2285 198 CDD EFh 133 195 IPR002048 GO:0005509
Amo17g2285 198 ProSitePatterns EF-hand calcium-binding domain. 178 190 IPR018247 -
Amo17g2285 198 SMART efh_1 169 197 IPR002048 GO:0005509
Amo17g2285 198 SMART efh_1 96 124 IPR002048 GO:0005509
Amo17g2285 198 SMART efh_1 60 88 IPR002048 GO:0005509
Amo17g2285 198 Gene3D - 40 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2285 Amo-Chr17 116599841 116600808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2285 7 195 EF-hand Containing Proteins AT3G50770 50.000 1.24e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2285 K13448 - gmx:100775336 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2285 17 116599841 116600808 Amo17g2285 17 116599841 116600808 ECH