Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2204 ATGGACCTCGATCCTCGTCAATACGAAAACATTGCTATAAATGATGATGACATCCATAGTATTATTCTGTCATATCTTATACACAATTGCTACAAAGAATCAGTGGAGTCATTCATTGCTTGCACTGGGATGAAGCAGCCAGCAAATTATATGGAGAACATGGAGAAAAGAAAAAGAATCTTTCACTTTGCACTAGAAGGAAATGCACTTAAGGCTATTGAGCTTACTGACCAGATGGCACAGGAAATTTTACAAAATAATAAGGATTTACACTTTGATCTTCTAAGCCTTCATTTTGTGGAGCTCATATGCTCTAGAAAATGCTCAGAAGCCTTGGAGTTTGCACAGACCAAGTTGAGCCCTTTCGGAAAGGAGAAAAAATACATGGAAAAGCTTGAAGACCTCATGGCTCTTCTTGCTTACAAGGACCCAGAGAAGTCCCCAATGTTTCATCTTCTTAGCTTAGAGTATCGACAGCAGGTTGCAGATAACTTGAATCGTGCGATTCTTGAACACTTGAACCTTCCCAGCTACACAGCAATGGAAAGACTAATACAACAAACTACGGTGGTCAGGCAATGCTTAAATCAAGAGGCTGGCAAGGATGGCCCCACACCATTTTCTTTGAAGGATTTCCTCAAAAGTTGA 648 0.4028 MDLDPRQYENIAINDDDIHSIILSYLIHNCYKESVESFIACTGMKQPANYMENMEKRKRIFHFALEGNALKAIELTDQMAQEILQNNKDLHFDLLSLHFVELICSRKCSEALEFAQTKLSPFGKEKKYMEKLEDLMALLAYKDPEKSPMFHLLSLEYRQQVADNLNRAILEHLNLPSYTAMERLIQQTTVVRQCLNQEAGKDGPTPFSLKDFLKS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2204 215 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Amo17g2204 215 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Amo17g2204 215 PANTHER RAN BINDING PROTEIN 9-RELATED 8 214 - -
Amo17g2204 215 SMART toby_final6 106 201 IPR013144 -
Amo17g2204 215 SMART ctlh 53 110 IPR006595 -
Amo17g2204 215 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 8 214 - -
Amo17g2204 215 Pfam CTLH/CRA C-terminal to LisH motif domain 54 191 IPR024964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2204 Amo-Chr17 113153060 113156248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2204 K23338 - gmx:100800484 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2204 17 113153060 113156248 Amo17g2204 17 113153060 113156248 ECH
Amo08g0144 08 2550372 2553525 Amo17g2204 17 113153060 113156248 hybridization