Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2120 ATGGAGCATAATAAGCTCACATTAATAAATCCAATCTCAGTACTAATAACACTTTGTGTATTAGTATCAGAGGGGAAAGCAACTACCTTCACACTACTCAACAAATGTGACTACACTGTGTGGCCGGGAATTCTCACTAACGCTGGTGTCGACCCTCTTCCGGTCACCGGCTTCGCCCTCCGAACCGGCGAGTCCAAAACCATCACGGCACCAACCACCTGGGGTGGCCGTTTCTGGGGCAGGACACTCTGCGCCCAAGACTCCGCCGGAAAATTCTCATGCGGCACTGGCGATTGCGGCTCCGGCAAACTAGAATGTGCTGGCAGCGGTGCCACGCCGCCGGCAACCCTGGCAGAGTTCACCCTCCATGGCGCCGGAGGACTAGATTTCTTTGACGTCAGCTTGGTCGACGGTTACAACCTCCCGATTACGGTGGTTCCGCAGGGTGGCTCCGGCGAAAACTGCACCATCACGGGGTGCGTGGGAGACCTCAATGGCGATTGTCCATCGGAGCTGAGGGTTATGAGCGAGGATGGGAAACGTGGCGTGGCGTGTAAGAGCGCGTGCGATGCGTTCCGGTTGCCGCAGTATTGCTGCGACGGCGCGTACCGCTCACCGGACACTTGCAAGCCTTCGTCTTACTCGAAGGTGTTCAAGAGCGTGTGCCCACGCGCGTATAGCTACGCGTATGACGACAAGACGAGCACATTTACGTGCGCATCTGCCGATTACACCATTACGTTTTGTCCTTCCCCCGATACTAACCCCAGTAGTAAGAAATCGTGGGAGGGACAAAACTCGAACTCAGATAGTAACGAATCTTCTTCGTCATCATCTCCATCTTCGTCTTCTACTCCAACATCACCACAGGTGAGCAAGGGAGGAATGGTGTACGTAGGTGCACTAGACCAAAGTGAAATACCATGGTCAGCGTGCACTCGTGCTAGGGAATCCCAATCCACTGCAGCCTTCATCGTCATTATGGCAATTTGGCGCTTGTGGCAACTGCTCTTTTAG 1017 0.5418 MEHNKLTLINPISVLITLCVLVSEGKATTFTLLNKCDYTVWPGILTNAGVDPLPVTGFALRTGESKTITAPTTWGGRFWGRTLCAQDSAGKFSCGTGDCGSGKLECAGSGATPPATLAEFTLHGAGGLDFFDVSLVDGYNLPITVVPQGGSGENCTITGCVGDLNGDCPSELRVMSEDGKRGVACKSACDAFRLPQYCCDGAYRSPDTCKPSSYSKVFKSVCPRAYSYAYDDKTSTFTCASADYTITFCPSPDTNPSSKKSWEGQNSNSDSNESSSSSSPSSSSTPTSPQVSKGGMVYVGALDQSEIPWSACTRARESQSTAAFIVIMAIWRLWQLLF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2120 338 Gene3D Thaumatin 28 250 IPR037176 -
Amo17g2120 338 PANTHER BNAA02G17480D PROTEIN 11 277 - -
Amo17g2120 338 PANTHER OS03G0233200 PROTEIN 11 277 IPR001938 -
Amo17g2120 338 MobiDBLite consensus disorder prediction 256 293 - -
Amo17g2120 338 CDD TLP-PA 29 249 - -
Amo17g2120 338 Pfam Thaumatin family 34 250 IPR001938 -
Amo17g2120 338 ProSiteProfiles Thaumatin family profile. 27 250 IPR001938 -
Amo17g2120 338 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Amo17g2120 338 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Amo17g2120 338 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Amo17g2120 338 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Amo17g2120 338 SMART tha2 30 250 IPR001938 -
Amo17g2120 338 MobiDBLite consensus disorder prediction 256 292 - -
Amo17g2120 338 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Amo17g2120 338 SUPERFAMILY Osmotin, thaumatin-like protein 28 251 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2120 Amo-Chr17 110064018 110067394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2120 12 276 Receptor kinase-like Gene Family AT5G38280 50.746 3.95e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2120 - - gmx:100795186 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2120 17 110064018 110067394 Amo17g2120 17 110064018 110067394 ECH
Amo08g0195 08 3290483 3293856 Amo17g2120 17 110064018 110067394 hybridization