Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2101 ATGACTCAAGATCTTGAGATGAAGGATCGTTCAACGCCTTCCAACTCTGTCTCCTCAGCTGTTCCATCTACTTTGCAGCATTTGAAGGAGATAGCATCTCTTATTGAGACCGGTTCGTACTCGAAGGAAGTTCGCAGAATTGCTCGTGCTGTTCGCCTTACAATCGCATTGAGGCGCAAATTGACAGCTTCCGTTATATCATCTTTTCTCGATTATGTCCTCACTACCGGTTCTGAGGCTCACGCCAAATTATCTGCCTATATTCCCAAGGATGAGGATCATGAGATGGAAGTGGATGCTGCTACGTCTGCAATTCAAACTCCAGCTAAACATTTGTTGCCGGAGATAGAAATATATTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAGGTACAATGAGGCCAAAGCTTGTTCGTCTGCAAGCATTGTTTTGTTGAAGAATCTGAACAGAAGAACTGTTGATGTTATTGCATCAAGACTGTACTTCTATTATTCTTACAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGAAACCTTCTGGCTTTGCACCGTATTGCTACTCTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTAAATCTGTTGCTTCGTAACTACCTTCACTACAATCTGTACGATCAGGCCGAGAAGCTGAGGTCCAAGGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTAGGAAAGATTCGTACAATTCAGTTGGAGTATACTGATGCAAAAGAGTCTCTCCTCCAAGCTGCCCGAAAAGCTCCAGTTGCAGCACGTGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCCGAGCGAACTGTGTTTATGCAGAGAGGGATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACAAATGCTGTCCGGATTGGTGACTTGGAGCTGTTTAGGAATATTGCAGACAAGTTCGCTACCACCTTTAGTACCGACAGAACCCATAATTTGATAGTTCGTCTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCCCGCATCTCACTAGCTGATGTTGCTAAGAAATTGAGGTTGAACTCAGCAAATCCCGTTGCTGATGCTGAGAGCATTGTCTCAAAGGCTATCCGCGATGGGGCGATTGATGCTACGTTGGATCATGCAAATGGGTGGATGGTTTCTAAAGAAACTGGGGATATCTACTCGACAAATGAGCCTCAACTGGCTTTTAATTCTCGGATTGCCTTCTGTCTTAATATGCACAATGAAGCTGTTCGAGCCCTTCGATTTCCTCCAAACACGCACAAGGAAAAGGAAAGTGCTGAAAAGAGGAGAGAGAGACAACAGCAAGAACAAGAATTAGCTAAGCATATTGCGGAGGAAGATGATGATGAATTCTGA 1464 0.4419 MTQDLEMKDRSTPSNSVSSAVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASVISSFLDYVLTTGSEAHAKLSAYIPKDEDHEMEVDAATSAIQTPAKHLLPEIEIYCYLLVLLFLIDQKRYNEAKACSSASIVLLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQRGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSTDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDEF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2101 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Amo17g2101 487 Coils Coil 454 481 - -
Amo17g2101 487 MobiDBLite consensus disorder prediction 452 480 - -
Amo17g2101 487 Pfam Proteasome regulatory subunit C-terminal 420 485 IPR013586 GO:0000502|GO:0030234|GO:0042176
Amo17g2101 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Amo17g2101 487 SMART PINT_4 345 438 IPR000717 -
Amo17g2101 487 Gene3D - 244 441 - -
Amo17g2101 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Amo17g2101 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Amo17g2101 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Amo17g2101 487 Pfam PCI domain 311 416 IPR000717 -
Amo17g2101 487 MobiDBLite consensus disorder prediction 452 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2101 Amo-Chr17 108796698 108801123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2101 K03033 - gmx:100814379 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2101 17 108796698 108801123 Amo17g2101 17 108796698 108801123 ECH
Amo08g0221 08 3628283 3632588 Amo17g2101 17 108796698 108801123 hybridization