Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1633 ATGGCGCCCAATTTGAGCCTCCGAAATGTGGTTCCGTCGTTGTGTCTTCTCCTGGTGCTCATCGGGAGAGGCCAACGAGCATGGGCCCACGACTACGTGGACGCATTGTCGAAGGCCATCCTGTTCTTCGAGGGACAGCGTTCGGGCTTCCTGCCAGAGGATCAGAGACTCAAGTGGCGAGCCCATTCGGGCCTCAGTGATGGCTGGACCTACAACGTGGACCTCACCGGGGGTTATTACGACGCCGGCGACAACGTGAAGTTCGGGTTTCCGATGGCATTCACGACGACAATGCTGTCGTGGAGCGTCGTTGAATTTGGGGAGATGATGCCACCAGAGGAGCTCAGAAATGCCAGAGTTGCAATCCGCTGGGCCACTGATTATTTGCTCAAGACCGTTTCCCAGCCCAACCGCATTTTCGTTCAGGTGGGTGACCCAATCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACATCCAGGGCCGTGTATGCTGTTGACGCACCAAACCCGGCTTCTGACGTTGCCGGGGAAACTGCGGCGGCACTGGCAGCTTCATCGATGGTGTTCCTATCATCTGACCCCGGTTATTCAGAGACATTGCTGCGAAATGCCGTTAAGGCCTTTCAGCTTGCGGATAACTATAGGGGTGCCTACAGTGACAATTCTGATGTTAAGGGTGGTGTCTGTCCATTTTATTGTGACTTTGATGGCTATCAGGACGAATTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACGAAGGACGATAATTTCCTGAACTACATTCAAAGCAATGGCAAAACGCTTGGTGCTGAGGATAATATCAATGAGTTCGGTTGGGACAACAAGCATGCTGGGCTCAACGTTCTTGTCTCCAAGGAAGTGGTAGAAGGAAACGTATATTCTCTAGAATCATATAAGGCCTCAGCAGAGAGCTTTCTGTGCACATTGATACCAGAAACAGCAGCAAGCTCTCACATAGAGTACTCCCCCGGTGGACTGATATACAGGCCAGGTGGCAGCAACTTACAGCACGCAACTTCAATCGCTTTCCTTGAATTGGTTTATGCTAACTACCTCTCTCGCACCTCTCAAGACATAAACTGCGGCAACGTTTATGTTAGTGCCCAGACACTTCGCCAGCAAGCAAAGAAACAAGTTGATTACATCCTGGGGGATAATCCAATGAGGCTATCGTACATGATTGGGTACGGCAACAATTATCCACAGCGAATCCATCATCGCGGCTCTTCTTTGCCCTCTGTCAAGGATCATCCTCAGGTGATCGCTTGCAAAGAGGGTTCAACCTATTTTAACTCGACGGGTCCTAACCCGAATGTTCTTGTTGGAGCTGTTGTGGGAGGACCAGGACAAGATGACGTATATGTGGATGATAGGGCTGATTTTAGGAAGTCCGAGCCTACCACATATATTAATGCTCCATTTGTTGGGGTTTTGGCATACTTTGCTGCTAATCCCAATCCGTGA 1497 0.507 MAPNLSLRNVVPSLCLLLVLIGRGQRAWAHDYVDALSKAILFFEGQRSGFLPEDQRLKWRAHSGLSDGWTYNVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVVEFGEMMPPEELRNARVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTSRAVYAVDAPNPASDVAGETAAALAASSMVFLSSDPGYSETLLRNAVKAFQLADNYRGAYSDNSDVKGGVCPFYCDFDGYQDELLWGAAWLRRATKDDNFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVVEGNVYSLESYKASAESFLCTLIPETAASSHIEYSPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQDINCGNVYVSAQTLRQQAKKQVDYILGDNPMRLSYMIGYGNNYPQRIHHRGSSLPSVKDHPQVIACKEGSTYFNSTGPNPNVLVGAVVGGPGQDDVYVDDRADFRKSEPTTYINAPFVGVLAYFAANPNP* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1633 498 SUPERFAMILY Six-hairpin glycosidases 18 494 IPR008928 GO:0005975
Amo17g1633 498 PANTHER ENDOGLUCANASE 24 14 497 - -
Amo17g1633 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Amo17g1633 498 Gene3D - 28 495 IPR012341 GO:0005975
Amo17g1633 498 Pfam Glycosyl hydrolase family 9 32 489 IPR001701 GO:0004553|GO:0005975
Amo17g1633 498 PANTHER ENDO-1,4-BETA-GLUCANASE 14 497 - -
Amo17g1633 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1633 Amo-Chr17 67731225 67734077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1633 10 495 Glycoside Hydrolase AT1G70710 60.082 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1633 K01179 - gmx:100799911 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1633 17 67731225 67734077 Amo17g1633 17 67731225 67734077 ECH