Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1626 ATGAGTTCTGACAGCAGGAGCCGAAGCAGAAGCAGGAGCAGGAGCCCAATGGATCGTAAGATCCGCTCTGATCGATTTTCATATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGGTTTTCTTTTTCTTTTTTTTTTTTTTATTTTCGTAATAATTTAATTACCATTCGTTTTCTATGCTTAATGCTTAATTGCTTTTTCTCTGTTTTTGCTTTCTTTTTCAGCCGAGACAATTTGTGTAAGAACTGCAAGAGACCTGGTCATTATGCTAGGGAATGCCCAAATGTTGCAATTTGCCACAATTGTGGACTCCCTGGGCACATTGCTTCTGAATGCACCACAAAATCGTTGTGCTGGAATTGTAAAGAACCTGGGCACGTGGCTAGCAACTGTCCAAATGAAGGCATCTGTCATACCTGTGGTAAAGTTGGACATCGCGCAAGGGAGTGCACAGCACCTCCAATGCCACCAGGGGACTTGAGGTTGTGCAACAACTGTTATAAACAGGGTCATATTGCAGCTGAATGCACCAATGAGAAAGCATGCAACAACTGTAGGAAGACAGGACACCTGGCACGTGATTGTCCAAATGATCCCATTTGTAACTTGTGCAATGTTTCTGGGCATGTAGCTAGACAGTGTCCAAAAGCTAACATGCTTGGAGATCGTGGCACCAGTGGCGGTATGCGTGGGGGTGGTGGTGGTTACCGAGATGTTGTATGCCGGAATTGCCAGCAATTGGGTCACATGAGTCGGGACTGCATGGGACCTCTGATGATTTGTCACAATTGTGGAGGTCGTGGTCACCTGGCATATGAGTGCCCTTCAGGTCGATTTGTGGATCGTTATCCCAGGCGGTACTGA 873 0.4628 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFRFSFSFFFFYFRNNLITIRFLCLMLNCFFSVFAFFFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHVASNCPNEGICHTCGKVGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANMLGDRGTSGGMRGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPRRY* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1626 290 PANTHER - 1 290 - -
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 204 219 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 102 115 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 PANTHER OS10G0545300 PROTEIN 1 290 - -
Amo17g1626 290 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 140 153 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SUPERFAMILY Retrovirus zinc finger-like domains 80 118 IPR036875 GO:0003676|GO:0008270
Amo17g1626 290 Gene3D - 118 137 - -
Amo17g1626 290 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 243 259 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 82 98 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 139 155 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 203 219 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 244 257 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SUPERFAMILY Retrovirus zinc finger-like domains 119 157 IPR036875 GO:0003676|GO:0008270
Amo17g1626 290 Gene3D - 81 117 - -
Amo17g1626 290 SUPERFAMILY Retrovirus zinc finger-like domains 234 280 IPR036875 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 185 200 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 83 98 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 ProSiteProfiles Zinc finger CCHC-type profile. 264 279 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 SUPERFAMILY Retrovirus zinc finger-like domains 160 201 IPR036875 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 82 98 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 203 219 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 121 136 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 102 116 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 184 200 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 139 154 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 263 279 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Pfam Zinc knuckle 243 257 IPR001878 GO:0003676|GO:0008270
Amo17g1626 290 Gene3D - 238 281 - -
Amo17g1626 290 Gene3D - 138 182 - -
Amo17g1626 290 Gene3D - 183 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1626 Amo-Chr17 66698861 66700490 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1626 K09250 - gmx:100803820 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1626 17 66698861 66700490 Amo17g1626 17 66698861 66700490 ECH