Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1544 ATGATGAGTGACGACGCAGATTTCACGATCTCCCTCCTCCACCACCACAATCTCATCATCGTCCTCGCCGTCCTCATCATCGGCGCCACTCTCTACATCATCACCCGCCCCAGGTCCATCTACCTCCTCGATTCGTCCTGCTTCGGCCCACCGGACTACCTCCGCGTCGACTACAACCGCTTCATGGAACATTCCAGACTCACGGGGGAATTTGACGACTGTGCGCTTGAATTCCAGCGCAAAATCTTGCAGCGCTCTGGTCTTGGGGAAGAAACCTACTTCCCCGAAGCTATGCATGCCATCCCTCCAAACCCCTCCATGGCCGCCGCAAGACAAGAAGCCCAACAGGTCATGTTTGGCGCGCTCGACAATCTCTTTGCCAACACCGGCATCAAGCCGAAACAAATTGGAATCCTCATCGTGAATTGCAGCTTGTTCAACCCTACACCTTCTCTTTCCGCCATGATCGTCAACAAGTACAAGCTCAGGGAGAACACAAGGACCTACAATATTTCCGGGATGGGTTGCAGTGCAGGAGTGATAGCCATCGATATCGCCAAAGACTTGCTTCAAGTTCATAGAAACACCTACGCCGTGGTGGTGAGCACAGAGAACATCACGCAGAATTGGTACTTGGGGAACAAGAAATCAATGCTCATCCCTAATTGCTTGTTCCGGATGGGCGCTTCTGCGGTGCTTCTCTCCAACAAAAGCTCCGATAGGCGGCGTTCAAAGTACAAGCTTCTTCATGTAGTGAGAACGCACAAAGGTTCAGATGACAAGGCCTACAAATGCGTGTTTCAGGAAGAGGACGATGAAGGCAAAACAGGGGTTACGCTTTCCAAAGATCTGATGACCATTGCTGGTGAGGCTCTCAAGACTAACATAACCACGCTGGGTCCATTGGTGCTTCCCATAAGTGAGCAGCTTCTGTTCTTCGTTACGCTGGTTGCAAAGAAGATGTTGAATACGAAGGTGAAGCCTTACATCCCGGATTTCAAGCTGGCTTTCAGCCATTTCTGTATCCATGCGGGGGGGAGGGCGGTGATCGACGAGCTGGAGAAGAATCTGCAGCTGAGGGCAGAGCACGTGGAAGCTTCTAGAATGACGCTGCATAGGTTCGGGAACACGTCATCGAGTTCGATATGGTACGAGTTGGCGTACACGGAGGCGAAGGGGAGAGTGAGGAAGGGACACAGAGTGTGGCAGATAGCTTTCGGGAGTGGGTTCAAGTGTAACAGTGCTGTTTGGGTTGCTCTGAAAAATGTTAAGCCTTCTCCCAAGAATCCATGGGAAGATTGCATTCATAGCTACCCTGTTCAGCTTCTCACTTAA 1335 0.5131 MMSDDADFTISLLHHHNLIIVLAVLIIGATLYIITRPRSIYLLDSSCFGPPDYLRVDYNRFMEHSRLTGEFDDCALEFQRKILQRSGLGEETYFPEAMHAIPPNPSMAAARQEAQQVMFGALDNLFANTGIKPKQIGILIVNCSLFNPTPSLSAMIVNKYKLRENTRTYNISGMGCSAGVIAIDIAKDLLQVHRNTYAVVVSTENITQNWYLGNKKSMLIPNCLFRMGASAVLLSNKSSDRRRSKYKLLHVVRTHKGSDDKAYKCVFQEEDDEGKTGVTLSKDLMTIAGEALKTNITTLGPLVLPISEQLLFFVTLVAKKMLNTKVKPYIPDFKLAFSHFCIHAGGRAVIDELEKNLQLRAEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRVRKGHRVWQIAFGSGFKCNSAVWVALKNVKPSPKNPWEDCIHSYPVQLLT* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1544 444 PIRSF Very_long_ch_3-ktacl-CoA_syn 3 444 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo17g1544 444 Gene3D - 59 418 IPR016039 GO:0016746
Amo17g1544 444 SUPERFAMILY Thiolase-like 249 417 IPR016039 GO:0016746
Amo17g1544 444 Pfam FAE1/Type III polyketide synthase-like protein 33 321 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo17g1544 444 SUPERFAMILY Thiolase-like 27 244 IPR016039 GO:0016746
Amo17g1544 444 PANTHER 3-KETOACYL-COA SYNTHASE 4 17 443 - -
Amo17g1544 444 CDD CHS_like 22 417 - -
Amo17g1544 444 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 338 417 IPR013747 -
Amo17g1544 444 PANTHER 3-KETOACYL-COA SYNTHASE 17 443 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1544 Amo-Chr17 56970907 56972241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1544 17 442 Miscellaneous Gene Families AT1G19440 79.343 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1544 K15397 - fve:101298755 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1544 17 56970907 56972241 Amo17g1544 17 56970907 56972241 ECH