Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1490 ATGGATAGCATAATGAGCAAGCTTCGTAATCTTGACGCTTACCCTAAAATCAATGAGGATTTCTACAGCAGAACACTTTCCGGCGGCGTCATTACCCTTGCTTCCTCCGTTCTCATGATCTTGCTCTTCATCTCCGAGCTTCGATTGTATCTGCATGCTTCAACTGAGACAAAGCTTATTGTGGATACTTCTAGAGGTGAAACGCTGCGTATCAATTTTGATGTTACTTTTCCTGCCCTACCGTGCTCGATGCTCAGTGTTGATGCAATGGACATTAGTGGAGAGCAACATCTCGATGTAAGACATGATATAATCAAGAAAAGGTTAGATACTCAAGGCAATGTAATAGGTACAAGGCAAGATGGAATTGGTTCTCCCAAGATTGAAAATCCCTTGCAAAAGCATGGAGGCAGGCTAGAGCACAATGAGACTTATTGTGGTTCCTGCTATGGGGCAGAAGAGTCAGATGATGATTGTTGTAATTCCTGTGAGGATGTTCGTGAAGCATATCGGAAAAAAGGTTGGGCAGTCTCAAATCCAGATTTAATTGATCAGTGCAAAAGGGAAGGATTCTTGCAAAGAATCAAGGAAGAAGACGGTGAAGGATGCAACATATATGGCTTCTTGGAAGTAAATAAGGTGGCAGGTAATTTTCATTTTGCTCCGGGCAAAAGCTTTCAGCAATCTGGTGTACATGTACATGATCTGCTGGCTTTTCAAAAGGACTCGTTTAATTTAAGTCACCACATCAACAGATTAGCTTTTGGTGATTATTTTCCTGGTGTGGTGAATCCTCTTGATCGTGCACATTGGACTCAGAAAACACCAAGTGGGATGTATCAATATTTTATTAAGGTTGTGCCTACTGTTTACTCTGATGTGAGAGGACATACTATCCAAACAAACCAGTTCTCTGTGACAGAACACTTCAAGACTGGGGATGTGGGCCGATTCCAGTCCCTTCCCGGAGTTTTCTTCTTCTATGACCTTTCTCCAATTAAGGTTACCTTTACAGAAGAACCTGTCTCATTCTTGCATTTCCTTACTAATGTCTGTGCCATAGTTGGAGGTGTTTACACTGTATCTGGAATACTAGATTCGTTTATCTATCACGGTCAACGGGCTATCAAGAAGAAGATGGAACTTGGTAAATTTAACTGA 1161 0.416 MDSIMSKLRNLDAYPKINEDFYSRTLSGGVITLASSVLMILLFISELRLYLHASTETKLIVDTSRGETLRINFDVTFPALPCSMLSVDAMDISGEQHLDVRHDIIKKRLDTQGNVIGTRQDGIGSPKIENPLQKHGGRLEHNETYCGSCYGAEESDDDCCNSCEDVREAYRKKGWAVSNPDLIDQCKREGFLQRIKEEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNLSHHINRLAFGDYFPGVVNPLDRAHWTQKTPSGMYQYFIKVVPTVYSDVRGHTIQTNQFSVTEHFKTGDVGRFQSLPGVFFFYDLSPIKVTFTEEPVSFLHFLTNVCAIVGGVYTVSGILDSFIYHGQRAIKKKMELGKFN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1490 386 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Amo17g1490 386 PANTHER ENDOPLASMIC RETICULUM VESICLE TRANSPORTER PROTEIN 2 386 - -
Amo17g1490 386 Pfam Endoplasmic reticulum vesicle transporter 149 366 IPR012936 -
Amo17g1490 386 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 2 386 IPR045888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1490 Amo-Chr17 52527905 52545079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1490 K20367 - gmx:100782309 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1490 17 52527905 52545079 Amo17g1490 17 52527905 52545079 ECH