Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1404 ATGCACAAGAACCTCCAGAAGGCCCAGCTAGTTTTGGAGGCTTTTGACATATCGTCTTTGCAAATTTTTACTCCTCAAGAACTGGACTACCTACTTTGTGGTCGTAGGGAGATGTGGAAGGCTGATACACTAGTTGACCATATAAAGTTTGACCATGGATACACTGCCAAGAGCCCTGCCATAGTCAATCTTTTGTCAACTGCAGCCAATGCTTCGTCTAATGGGAATGGGCCTTCAGAATTAGCAGATGATGACTTGCCAAGTGTGATGACATGTGTTAATTACCTGAACCTTCCTCCTTATTCTACCAAGGAAATTATGTCCAACAAGCTACTCTATGCAATAAAATGA 351 0.4245 MHKNLQKAQLVLEAFDISSLQIFTPQELDYLLCGRREMWKADTLVDHIKFDHGYTAKSPAIVNLLSTAANASSNGNGPSELADDDLPSVMTCVNYLNLPPYSTKEIMSNKLLYAIK* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1404 116 ProSiteProfiles HECT domain profile. 11 61 IPR000569 GO:0004842
Amo17g1404 116 Pfam HECT-domain (ubiquitin-transferase) 13 69 IPR000569 GO:0004842
Amo17g1404 116 ProSiteProfiles HECT domain profile. 83 116 IPR000569 GO:0004842
Amo17g1404 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 14 69 IPR045322 GO:0006511|GO:0061630
Amo17g1404 116 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 14 69 - -
Amo17g1404 116 Pfam HECT-domain (ubiquitin-transferase) 82 116 IPR000569 GO:0004842
Amo17g1404 116 Gene3D Hect, E3 ligase catalytic domain 55 116 - -
Amo17g1404 116 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 69 115 - -
Amo17g1404 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 69 115 IPR045322 GO:0006511|GO:0061630
Amo17g1404 116 SUPERFAMILY Hect, E3 ligase catalytic domain 13 115 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1404 Amo-Chr17 45184274 45187090 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1404 K10590 - adu:107488948 184.111