LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g1181	ATGCAAGCTGTTGGATCCGTGATGACAAACAAATACAGCGAAGGGTATCCGGGAGCTAGATACTACGGAGGAAATGAGTACATTGACATGGCCGAGACCTTGTGTCAGAAACGTGCACTTGAAGCTTTCAATTTGGATCCAGCAAAATGGGGAGTTAATGTGCAGTCATTATCTGGCTCCCCTTCCAACTTCCAAGTTTACACTGCTTTATTGAAGCCTCATGAGAGAATTATGGCACTTGATCTTCCACATGGTGGGCATTTGTCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACGATGCCATACAGATTGGATGAAAGCACTGGTTATATTGATTATGACCAGTTGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCCAGTGCTTATTCCCGCCTTTATGATTATGCAAGAATTCGCAAGGTCTGTGATAAGCAGAAGGCAATTATGTTGGCTGATATGGCACACATCAGTGGATTGGTTTCTGCAGGTGTTATTCCTTCTTGTTTTGATTATGCAGATGTTGTGACAACCACAACACATAAGTCACTCCGTGGACCACGTGGGGCAATGATCTTCTTCAGGAAGGGTCTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTCTATGACTATGAAGATAAAATAAATCAGGCTGTTTTTCCCGGACTTCAAGGTGGTCCACACAACCACACGATTTCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACAAGAATTCAAGGATTACCAAAAGCAAGTTGTCAGTAATTGTGCGGTATTCTCACAGAGTTTGCTAGAGAAAGGCTACGATATTGTATCTGGTGGAACTGATAACCATCTATTGTTAGTTAACTTAAGAAACAAGGGCATCGATGGCTCAAGGGTAGAGAAGGTGTTAGAAGCAGTTCATATAGCAGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCCGGAGGCATCCGAATGGGGACCCCTGCTCTCACATCAAGAGGGTTTGTTGAGGAGGATTTTAAGAAAGTAGCTGAATTTTTTGATTTAGGAGTCAAGTTAGCCTTACAGATTAAGGCAAATACCAAAGGTACGAAGTTGAAAGATTTTGCTGCAGAAATGCAATCAGATGCATGCCAATCTGATATTGCAAAGCTCCGTCATGAAGTTGAGGAATATGCAAAGCAGTTCCCCACAATTGGCTTTGAGGTGGAGAAAATGAAGTACGGTAATTGA	1281	0.4239	MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFNLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAALFRPKLIVAGASAYSRLYDYARIRKVCDKQKAIMLADMAHISGLVSAGVIPSCFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVFYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTQEFKDYQKQVVSNCAVFSQSLLEKGYDIVSGGTDNHLLLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEFFDLGVKLALQIKANTKGTKLKDFAAEMQSDACQSDIAKLRHEVEEYAKQFPTIGFEVEKMKYGN*	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g1181	426	Pfam	Serine hydroxymethyltransferase	1	362	IPR039429	-
	Amo17g1181	426	Coils	Coil	391	411	-	-
	Amo17g1181	426	CDD	SHMT	1	408	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Amo17g1181	426	ProSitePatterns	Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.	188	204	IPR019798	GO:0030170
	Amo17g1181	426	Gene3D	Aspartate Aminotransferase, domain 1	264	417	IPR015422	GO:0003824
	Amo17g1181	426	Gene3D	-	1	263	IPR015421	GO:0003824
	Amo17g1181	426	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	1	425	-	-
	Amo17g1181	426	SUPERFAMILY	PLP-dependent transferases	1	417	IPR015424	-
	Amo17g1181	426	PIRSF	SHMT	1	421	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Amo17g1181	426	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	1	425	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g1181	Amo-Chr17	32680045	32686109	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g1181	K00600		-	gmx:100816213	783.867

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g1181	17	32680045	32686109	Amo17g1181	17	32680045	32686109	ECH