Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1180 ATGGCATCATTTCCTTCTGCTTCTGCTGCTCTCATTACAACTCTTAAGCTCCAACCACAATTCAAAACACACCCACCAACCTCCCTTCCCATAGAAAAGAGTCAGGGCATTTCTTTGCAGAAAAGCAACTACTTCACGGATTTGGATCCCAAGAATCTTGATTTTCGTGAAACGATCTCGTTGACAAAACAAATGACAGAGCTGGACTCATCTTTCTATTTTCCCCTGTTGCAAGAATGCTTAGACAGGACATCTTTCCTGGATGCACAAGTTATTCATGGTCATGCCATTAAAACCGGAGCGCACCAAGATGTTTTCTTGATGTCATTTCTGGTCAATGTTTATGCTAAATGTGGTCGCATGGAAGCCGCACGCAAAGTATTCGACAAAATGCCAAGGAGAAATGTGGTGGGTTGGACTACATTGATGGTGGGTTATGTGCAGAAAATGCAGCCAGAGAATGCTATTTATGTGTTCCAAGAGATGTTGTATGCAGGGAGTTATCCTTCCAATTACACACTTGCCGTAGCTGTAAGCGCTTGTACATCAATGCGATCAGTTAAGTTAGGGAATCAGTTCCATGCTTACATAATCAAATACCAGATTGATTTTGACACTAGCATTTGCAATGCACTTTGTAGTTTATACTCCAAATGTGGCAAATTGAAATTAGCTCTCAGTGCATTTAGGAGAATCAAGGAAAAGAATGTTGTTTCTTGGACTGCTGCTATTTCTGCTTGTGGGGACAATGGTGACCCAATGACGGGTTTAAGACTTTTCGTTGATATGCTTTCTGAGGACACACAGCCTAATGAGTTAACTTTATCCAGTGTCTTGAGCCAGTGTTGTGAGATTCCATTATTAGAACTCGGGACTCAGGTTCATTCGCTGTCTGCTAAATTAGGATACCAGTCGAATCTGCGTATAAGGAATTCTTTATTGTATTTGTATCTCAAGTGTGGTTGCATTGATGAGGCACAAATTTTGTTTAGCGGAATGGATGATGTTAGTTTGGTTTCATGGAATGCAATGATTGCTGGGCATGCACAAATGATGGAGCTCACAAAGGATAATATTTCTGCTTGCCACTATGGAATTGAAGCACTCAAACTTTTCTCTGAGTTGCATCGGTTTGGCATGAAGCCAGACCTGTTTACCTTCTCAAGTGCCTTATGTGTCTGTAGTAGGATGGTGGCTTTAGAGCAGGGGGAACAGATTCATGCTCAGGCCATCAAAATCGGGTTCCTATCGGAAGTGGTAGTGGGGAGTTCACTGATTAATATGTACAATAAATGTGGAAGTATTGAGAGGGCAAGCAAAGCATTTCTAGAGATGTCTACTAGGACTATGATATCATGGACTTCCATGATTACAGCTTTTTCACAGCATGGTTGGTCTCAGCAAGCGTTGGAGCTTTTTGAGGACATGAAACTAACAGGAGTTAGACCAAACGCAGTCACTTTTGTTGGGGTTTTATCTGCTTGTCGCCATGCTGGCATGATCAGTGCGGCACTCACTTATTTTGAGATTATGCAGAAGGAGTACAAAATCATGCCTGTGATGGACCATTATGTTTGCCTTGTTGATTTGTTTGTGAAGTTTGGACGTCTAGACGAAGCTTTCAATATGATTAAGAAAATGGATTTCGAGCCTAGCGAGTATATCTTGTCAAACTTGGTAGCAGGTTGCCGAAGCCACGGTAATCAGGAGTTGGGGTTTCAAGCTGCCGAGCAGTTACTAAGTCATAAACCGAAAGATACCGAAACATATTTGTTGTTATTGGATATGTACCATTCTGTAGAGAGATTTGAGGATGTTTCTAGGGTGAAGAAGATAATGAAGGAGGAAAAACTGGCGATTACATTCGGATTGGAGAACTTGCCGAGTTCCTCGCCGATACGAGTAGTGAAGAGTACCTTAATGTGCAGAGATGGCCATGATTTTGTTAAGTATGTATCAACACTGACTGGTAGAGAAATCATTATCAAAGACAGTAAGCGGCTTCATAAATTTGTGAATGGACAATGCTCATGTGGGGATTTCGCTGCGAAACCTCTTATTCATGTCCTTTGGCTTGTTAGTCATGAAAAAATAATTGATTTCGCACATGAAGCAATGCCAATGGAAAAGGCTGAGGAATCTATTCAAAAAGCCCCAGGACATTTTCTATATCACTGA 2178 0.4141 MASFPSASAALITTLKLQPQFKTHPPTSLPIEKSQGISLQKSNYFTDLDPKNLDFRETISLTKQMTELDSSFYFPLLQECLDRTSFLDAQVIHGHAIKTGAHQDVFLMSFLVNVYAKCGRMEAARKVFDKMPRRNVVGWTTLMVGYVQKMQPENAIYVFQEMLYAGSYPSNYTLAVAVSACTSMRSVKLGNQFHAYIIKYQIDFDTSICNALCSLYSKCGKLKLALSAFRRIKEKNVVSWTAAISACGDNGDPMTGLRLFVDMLSEDTQPNELTLSSVLSQCCEIPLLELGTQVHSLSAKLGYQSNLRIRNSLLYLYLKCGCIDEAQILFSGMDDVSLVSWNAMIAGHAQMMELTKDNISACHYGIEALKLFSELHRFGMKPDLFTFSSALCVCSRMVALEQGEQIHAQAIKIGFLSEVVVGSSLINMYNKCGSIERASKAFLEMSTRTMISWTSMITAFSQHGWSQQALELFEDMKLTGVRPNAVTFVGVLSACRHAGMISAALTYFEIMQKEYKIMPVMDHYVCLVDLFVKFGRLDEAFNMIKKMDFEPSEYILSNLVAGCRSHGNQELGFQAAEQLLSHKPKDTETYLLLLDMYHSVERFEDVSRVKKIMKEEKLAITFGLENLPSSSPIRVVKSTLMCRDGHDFVKYVSTLTGREIIIKDSKRLHKFVNGQCSCGDFAAKPLIHVLWLVSHEKIIDFAHEAMPMEKAEESIQKAPGHFLYH* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1180 725 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Amo17g1180 725 TIGRFAM PPR: pentatricopeptide repeat domain 451 485 IPR002885 -
Amo17g1180 725 TIGRFAM PPR: pentatricopeptide repeat domain 111 137 IPR002885 -
Amo17g1180 725 Gene3D Tetratricopeptide repeat domain 450 627 IPR011990 GO:0005515
Amo17g1180 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Amo17g1180 725 Pfam DYW family of nucleic acid deaminases 612 681 IPR032867 GO:0008270
Amo17g1180 725 Gene3D Tetratricopeptide repeat domain 56 189 IPR011990 GO:0005515
Amo17g1180 725 Gene3D Tetratricopeptide repeat domain 291 410 IPR011990 GO:0005515
Amo17g1180 725 Gene3D Tetratricopeptide repeat domain 190 290 IPR011990 GO:0005515
Amo17g1180 725 SUPERFAMILY TPR-like 104 605 IPR011990 GO:0005515
Amo17g1180 725 PANTHER OS01G0913400 PROTEIN-RELATED 67 619 - -
Amo17g1180 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Amo17g1180 725 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 67 619 - -
Amo17g1180 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Amo17g1180 725 Pfam PPR repeat 110 136 IPR002885 -
Amo17g1180 725 Pfam PPR repeat 311 333 IPR002885 -
Amo17g1180 725 Pfam PPR repeat 423 446 IPR002885 -
Amo17g1180 725 Pfam PPR repeat 524 547 IPR002885 -
Amo17g1180 725 Pfam PPR repeat 139 166 IPR002885 -
Amo17g1180 725 Pfam PPR repeat family 235 283 IPR002885 -
Amo17g1180 725 Pfam PPR repeat family 451 495 IPR002885 -
Amo17g1180 725 Pfam E motif 566 617 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1180 Amo-Chr17 32673853 32677319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1180 73 618 Glycoside Hydrolase AT3G49170 33.273 2.25e-98 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1180 - - gmx:100781103 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1180 17 32673853 32677319 Amo17g1180 17 32673853 32677319 ECH