Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0205 ATGGGGGATAATTTGGAAAAAGGGCAGGATTACGAACAGAAAGCAGAGAAGAAGCTCGGTGGTTGGGGATTGTTTGGTTCCAAATTCGACGATGCTGCAGACCTATTCGAAAGAGCCGCTAATTGCTACAAGCTCGCAAAATCTTGGGATAAAGCAGGAGCCACCTATGTGAAGTTGGCAAATTGCCATATCAAGTTGGATAGCAAACATGAAGCTGCCGGTGCCTATGTTGATGCAGCACATAGTTACAAAAAAGTTAATATAAGTGAGGCTGTATCTTGCTTAGACCAAGCTGTAAATCTTTTCTGTGAAATTGGAAGAATCACTATGGCAGCTAAATATTTGAAGGAAATTGCGGAGTTGTATGAATCTGAACAGAACATTGAGCAGGCCATTGCTTACTATGAAAAGTCTGCTGACTTTTATGAAAATGAAGAAGGGACAACTTCTGCAAACCAGTGCAAGGCAAAAGTTGCTCAATTTGCTTCTCAACTAGAACAATACCAGAAGGCAATTGAGATTTACGAAGACATAGCACGCCAATCTCTCAACAATAATTTGCTGAAATATGGAGCTAGAGGGCATCTTCTTAATGCCGGCATTTGCCAACTTTGCAAGGGAGACGTTGTCGCTATCACCAATGCGTTGGAGCGATATCAGGAGATGGATCCAACATTTGGAGGCACACGTGAATATAGACTATTGGCGAATATTGCTTCCGCGATGGATGAAGAAGATGTCACAAAATTTACCGAAGTTATCAAGGAATTCGATAGCATGAGCCCTCTGGATTCATTGAAGACAACGCTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTAA 870 0.4184 MGDNLEKGQDYEQKAEKKLGGWGLFGSKFDDAADLFERAANCYKLAKSWDKAGATYVKLANCHIKLDSKHEAAGAYVDAAHSYKKVNISEAVSCLDQAVNLFCEIGRITMAAKYLKEIAELYESEQNIEQAIAYYEKSADFYENEEGTTSANQCKAKVAQFASQLEQYQKAIEIYEDIARQSLNNNLLKYGARGHLLNAGICQLCKGDVVAITNALERYQEMDPTFGGTREYRLLANIASAMDEEDVTKFTEVIKEFDSMSPLDSLKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0205 289 CDD SNAP 7 278 IPR000744 GO:0006886
Amo17g0205 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Amo17g0205 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Amo17g0205 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Amo17g0205 289 Coils Coil 151 185 - -
Amo17g0205 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Amo17g0205 289 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Amo17g0205 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Amo17g0205 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0205 Amo-Chr17 3002513 3010471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0205 K15296 - gmx:100812517 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0205 17 3002513 3010471 Amo20g1297 20 27147848 27152641 ECH
Amo17g0205 17 3002513 3010471 Amo17g0205 17 3002513 3010471 ECH
Amo20g1297 20 27147848 27152641 Amo17g0205 17 3002513 3010471 PCT
Amo17g0205 17 3002513 3010471 Amo20g1297 20 27147848 27152641 PCT