Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4107 ATGAGTTATGACCCAGACGCGCGCGCATATAACAGCCCCTTTTCAAAAGGAAAGTCCGCGAACAAGCACACAAATATTTCATTTCTTCTCATTCTCATTCTGTTATACCCTTTCTTTTCAAACGCTACCTCGCTCACCATAGCCCTCGGAGTTCATCTCTCTCCGTACGTCATTCTTAGGGTTCTACCTTCAATGGCGTCGCAAGATTCGCTTCCGAAGACCGCCGACTCTTCGAAGCTTGCCGATCATCATACTCTTCTCAGCATCTGCAACTCTCTTGCCGCTGGTGGAATCGCAGGTGGAGTGTCGCGAACAGCTGTGGCTCCTTTGGAGAGATTAAAGATTCTGCTGCAGGTCCAAAATCGTGACAATATAAAATACAAAGGAACTATTCAAGGCTTAAAATATATATGGAGAACTGAGGGTTTTAAAGGGATGTTTAAAGGAAACGGAACTAACTGTGCCCGTATTGTCCCAAATTCGGCAGTGCAGTTCTTAAGCTACGAGGAAGTATCTAGGGGTATTTTGTGGCTCTACCGGCAACAAACTGGAAACGAAGCAACTCAGCTCAGTCCTCTTATGCGTCTTGGAGCCGGCGCATGTGCTGGAATCATTTCCATGTCTGCAACTTACCCTATGGACATGGTGCGAGGTCGGCTAACTGTCCAGACAGAGGCATCCCCACACCAATACAGAGGAATTTTTCATGCTCTGTCAACAGTTTTCCGGGAAGAAGGCCCTCGAGCCTTGTATAAAGGATGGTTACCATCAGTCATAGGAGGAATACCATATGTAGGTCTCAATTTTTCAGTGTATGAATCTTTGACGGACTGGTTGATTCGATCCAATCCACTTGGAATAGCTAAAGACTCTGAGCTAAGTGTTACCACAAGGCTTGCATGTGGGGCAGCCGCTGGCACTGTTGGTCAGACAGTGGCTTACCCCCTTGATGTCATTCGCCGGAGAATGCAGATGGTAGGCTGGAAAAATGCTCCTTCAGTTGTTGCTGGTGATGGAAAGAGCAAAGCTGAGTACGCTGGCATGGTTGATGCATTCAGGAAAACTGTGCAGCATGAAGGATTTGGAGCATTATACAAGGGCTTAGTACCCAATTCAGTGAAGGTGGTCCCGTCTATAGCTATTGCTTTCGTGTCATATGAGATGGCGAAGGACATGCTCGGAGTTGAATATCGGACATCTGACTGA 1206 0.4693 MSYDPDARAYNSPFSKGKSANKHTNISFLLILILLYPFFSNATSLTIALGVHLSPYVILRVLPSMASQDSLPKTADSSKLADHHTLLSICNSLAAGGIAGGVSRTAVAPLERLKILLQVQNRDNIKYKGTIQGLKYIWRTEGFKGMFKGNGTNCARIVPNSAVQFLSYEEVSRGILWLYRQQTGNEATQLSPLMRLGAGACAGIISMSATYPMDMVRGRLTVQTEASPHQYRGIFHALSTVFREEGPRALYKGWLPSVIGGIPYVGLNFSVYESLTDWLIRSNPLGIAKDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKNAPSVVAGDGKSKAEYAGMVDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVSYEMAKDMLGVEYRTSD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4107 401 Pfam Mitochondrial carrier protein 190 282 IPR018108 -
Amo16g4107 401 Pfam Mitochondrial carrier protein 292 393 IPR018108 -
Amo16g4107 401 Pfam Mitochondrial carrier protein 88 174 IPR018108 -
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 92 105 IPR002067 GO:0055085
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 251 269 IPR002067 GO:0055085
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 302 324 IPR002067 GO:0055085
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 105 119 IPR002067 GO:0055085
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 149 169 IPR002067 GO:0055085
Amo16g4107 401 PRINTS Mitochondrial carrier protein signature 205 223 IPR002067 GO:0055085
Amo16g4107 401 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 77 396 - -
Amo16g4107 401 PANTHER SOLUTE CARRIER FAMILY 25 77 396 - -
Amo16g4107 401 SUPERFAMILY Mitochondrial carrier 87 387 IPR023395 -
Amo16g4107 401 Gene3D Mitochondrial carrier domain 84 395 IPR023395 -
Amo16g4107 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 87 174 IPR018108 -
Amo16g4107 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 190 278 IPR018108 -
Amo16g4107 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 293 392 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4107 Amo-Chr16 153584563 153587904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4107 91 396 EF-hand Containing Proteins AT5G51050 37.459 2.34e-61 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4107 K14684 - gmx:100784834 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4107 16 153584563 153587904 Amo16g4107 16 153584563 153587904 ECH