Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4082 ATGGCGGAAGAATCGCAGTACGAAACCACAACCACTCCTCCTTCGTTGAAACGCAAGTACGACGACCAACCACCGCCGTCCTCGGGCCGCGTCACCGGATTCTCCGATGGCCCGCCTCCGCCTTCCTACAACAACGTCCCTCCGCCAGACCCCTCCGGCATCGAGCTCGCCAAGCTCCGAGCACAGGAGGTCGCCGCCCGCCTCCTCAGCGGCGCCCCTCCACCCGCTGCTGCCGGAGCTCTCGACGCCAAGCGTCCAAAGGTCGATAACGGCGCTGCTCCTCACTCCGGTTTCGATTCCGTTGCTGATGTGAAGTCTCAGTACTCGGCACCTTCGATTTCTCCATCTTCGGTTTCTTATGGGCATCAGGGTGCAAGCAAGAAGATTGATATCCCCAATGGAAGGGTTGGTGTTATTATTGGCAAGGGTGGTGAGACCATCAAGTACCTTCAGCTCCAATCTGGGGCGAAAATTCAGGTTACCCGTGATATGGATGCTGACCCCAATTCAACCACCAGGACAGTTGAGCTTATGGGTACTCCTGAAGCAATTTCTGCTGCTGAGAGGCTTATCAATGAAGTTCTTGCAGAGGCTGAAGCTGGAGGTTCTGGCATTGTAGCTCGACGAGTATCTGGGCAAGCTGGGTCTGATGAATTTTCCATGAAGATCCCAAATAATAAGGTTGGTCTTGTTATTGGTAAAGGTGGGGAAACAATAAAGAATATGCAAGCTTCCACTGGAGCTAGAATACAGGTGATTCCTCTTCATCTTCCCCCAGGTGACACATCCACGGAAAGAACAGTAAAAATTGAAGGGAACCCTGAACAAATTGAGTCTGCAAAGCAATTGGTTAATCAAGTTATCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGTTATTCTCAGCAAGGTTATCAAGCCCGGCCACCATCTAGCTGGGCTCCTCCTGGTGCTCCAATGCAACAACCTGGTTATGGCTACGTTCAGCCTGGAGGCTACTCTGGTCAATCGCAGCAGTATCCACCTTATGCAGGCTATCCTCCCACTTCAGCTGGTGGATACTCCACCAATTGGGACCAATCTGCTGCACCACCACCCCAGCAGTCTACTCATGGTGCTGGGTATGATTACTATGGTCAGCAGCAGCAAAACCCTGGAGGTGCACCTCCTGCTGATGGCAGTGCTTACAATTATAGTCAACCACCTTCCTCTGGTTATAGCCAACCTGGACATGGCTACGGTCACGATGGGTATGGTGGGTATCAGGCACCGCCGCAATCAGGGTATGGGCAGCCACCATCATATGATCAACAGCAAGGTTATGGCTCGGCCCCTAGCTATGGCAGTGGAAGCAACACAGCACAAGAGGGCCATGCTCCTAATTATGGATCACATGGTGATTCAACCCAAGTTCCACCTGGGCAACCCCCTTCAACCACTCAGCAAGGTTATGGTTCTGGCCAACAGCCAAGTCCAAATGCTGCCAACTATCCTCCACAAGGTACTGCTCAGCCCGGTTATGGGGCTCCCCCAACCTCCCAAGCTGCCTATGGCAATCCGCCCCAAGCAGGTTATGGAGGTGGTTATGGTCCCCCACAATCACAAAAGCCAGGCAGCACTCCACCTGTTTATGGACAGTCACAGTCACCCAATACGGCTGCAGGCTATGGTCAGTCTGGCCATGTGCAATCAGGGTATCCCCCTGCCCAGCCTCCGCCTTCTGGATATGGCCAACAAGAACCGGGTTCTCAAAGGGCTCCACCATCTGGTTATGGTGGTGCCCAACCAGGGTATGGTGCCCCATCATATGGTGCTCCGGGTGGTCAACCTGGGTATGGTCAAGCTCCACCATCATACAACAGTTCTTACGGTGCTGGTTACACTCAGCCTCCAGCATATTCTGGTGATGGAGCAGCAGCACAAACTGCTCAGCAGGGTAGTGTTCCAAAATCTTCACCGCAGAGTTGA 1977 0.5311 MAEESQYETTTTPPSLKRKYDDQPPPSSGRVTGFSDGPPPPSYNNVPPPDPSGIELAKLRAQEVAARLLSGAPPPAAAGALDAKRPKVDNGAAPHSGFDSVADVKSQYSAPSISPSSVSYGHQGASKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRTVELMGTPEAISAAERLINEVLAEAEAGGSGIVARRVSGQAGSDEFSMKIPNNKVGLVIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTVKIEGNPEQIESAKQLVNQVISGENRLRNPSMSGGYSQQGYQARPPSSWAPPGAPMQQPGYGYVQPGGYSGQSQQYPPYAGYPPTSAGGYSTNWDQSAAPPPQQSTHGAGYDYYGQQQQNPGGAPPADGSAYNYSQPPSSGYSQPGHGYGHDGYGGYQAPPQSGYGQPPSYDQQQGYGSAPSYGSGSNTAQEGHAPNYGSHGDSTQVPPGQPPSTTQQGYGSGQQPSPNAANYPPQGTAQPGYGAPPTSQAAYGNPPQAGYGGGYGPPQSQKPGSTPPVYGQSQSPNTAAGYGQSGHVQSGYPPAQPPPSGYGQQEPGSQRAPPSGYGGAQPGYGAPSYGAPGGQPGYGQAPPSYNSSYGAGYTQPPAYSGDGAAAQTAQQGSVPKSSPQS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4082 658 Gene3D K Homology domain, type 1 213 312 IPR036612 GO:0003723
Amo16g4082 658 Gene3D K Homology domain, type 1 119 212 IPR036612 GO:0003723
Amo16g4082 658 MobiDBLite consensus disorder prediction 641 658 - -
Amo16g4082 658 CDD KH-I 218 284 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 542 568 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 430 503 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 617 631 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 293 658 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 334 391 - -
Amo16g4082 658 CDD KH-I 126 191 - -
Amo16g4082 658 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 67 650 - -
Amo16g4082 658 SMART kh_6 215 289 IPR004087 GO:0003676
Amo16g4082 658 SMART kh_6 123 196 IPR004087 GO:0003676
Amo16g4082 658 ProSiteProfiles Type-1 KH domain profile. 124 191 - -
Amo16g4082 658 Pfam KH domain 220 285 IPR004088 GO:0003723
Amo16g4082 658 Pfam KH domain 128 193 IPR004088 GO:0003723
Amo16g4082 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 219 291 IPR036612 GO:0003723
Amo16g4082 658 ProSiteProfiles Type-1 KH domain profile. 216 284 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 67 99 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 293 312 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 1 54 - -
Amo16g4082 658 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g4082 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 127 202 IPR036612 GO:0003723
Amo16g4082 658 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 67 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4082 Amo-Chr16 153291872 153297382 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4082 K13210 - gmx:100813135 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4082 16 153291872 153297382 Amo16g4082 16 153291872 153297382 ECH