Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4048 ATGGCTCTCATGAACCGAACCGCCACGCGCCTCCCTCAACTCCTCTCACCACACCGCGCACTCTCTCTGCACACCACCCTCCCATCTCTCTACGCCGCCACCAACACCACGACCCCAGCCTCCTACCCCCGCCCGTCACCGCCATCGACCTCAAGCCCGCCGGGAATCTCGAAGACGGCGGAGTTCGTGATCTCGAAGGTGGATGACCTCATGAACTGGGCCCGGAGGGGATCGATCTGGCCGATGACGTTCGGACTGGCGTGCTGCGCCGTTGAGATGATGCACACCGGTGCCTCCAGATACGATCTTGATAGGTTTGGGATTATCTTCAGGCCAAGTCCTCGCCAATCTGATTGTATGATTGTTGCTGGAACTCTCACCAATAAGATGGCACCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGGTGGGTGATCTCTATGGGAAGCTGTGCCAACGGAGGTGGTTACTATCACTATTCCTACTCTGTTGTTCGCGGATGCGACAGGATTGTTCCTGTCGACATATATGTCCCAGGTTGCCCTCCAACTGCCGAAGCTCTACTCTATGGACTCCTCCAGCTGCAGAAGAAGATCAACAGGCGCAAGGACTTCCTCCTGTGGTGGACAAAGTGA 642 0.5639 MALMNRTATRLPQLLSPHRALSLHTTLPSLYAATNTTTPASYPRPSPPSTSSPPGISKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4048 213 PANTHER NADH DEHYDROGENASE 1 213 - -
Amo16g4048 213 Gene3D - 59 213 - -
Amo16g4048 213 MobiDBLite consensus disorder prediction 36 57 - -
Amo16g4048 213 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 54 202 IPR006138 GO:0008137|GO:0048038|GO:0051539
Amo16g4048 213 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 1 213 - -
Amo16g4048 213 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 88 197 IPR006137 GO:0051536
Amo16g4048 213 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 62 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
Amo16g4048 213 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 169 185 IPR006138 GO:0008137|GO:0048038|GO:0051539
Amo16g4048 213 SUPERFAMILY HydA/Nqo6-like 61 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4048 Amo-Chr16 152790553 152793721 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4048 K03940 - gmx:100802267 367.851