Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4041 ATGAGTTTCACTTTCATCAAAAAATTCGTTACTGAGTTGACTCGCTTCCCTTACACCTCCGCTTTTGTTCTCGCGTTCATCACTGTCGCAGCAGCTGCCGTCAGATTCCGCCGTCTGTCCAAACCGACGTCGTTTACGATGTCTTCTTCATCAGTAAACGACCCCGTTCAGCGCAACCGCATCTTCTCGAGCAAGCTCTACTTCGATGTGCCTCGCTCCAAGGTTCCGATTATCTATTCTGCATCTTATGACATATCCTTTCTCGGCATTGAGAAACTGCACCCGTTTGATTCTTCTAAATGGGGGCGAGTTTGTAGATTCCTAGTGTCGTTTGGTGTTCTGGATAAGAAATGCATTGTTGAGCCTCTTGAAGCTTCAAAGGATGATCTTTTAGTGGTGCACTCAGAATCGTACTTGAATAGCCTGAAGGAAAGTTCAAATGTGGCTACAATAATTGAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAGAGAGGATGGGCCATTAACGTAGGAGGAGGATTTCATCATTGCTCTGCAGAAAAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTGGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGACTTTGCCTATGATAGCCGAGTCTACATTTTGGACATGTACAACCCTGGAATATACCCTTTGGATTATGAGGCAAGGAACTACATAAATCAGAAAGTTGAAGTGAAGAGTGGGACACTCACGGAAGATTACCTGCAGAAATTAGATGAAGCACTAGAGGTTGCTGGGCGTAGCTTTGACCCTGAGTTGATAGTTTACAATGCCGGAACTGACATCTTAGATGGTGATCCATTAGGAAGGCTAAAGATTAGTCCTGATGGGATTACCCTCAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATTGTCATGCTCACGTCAGGTGGTTATATGAAATCCAGTGCTAGAGTCATTGCAGATTCAATAGTCAATCTGTCCAAGAAATGCTTGATAGAAGACAAACAGGATTCCTAA 1101 0.4305 MSFTFIKKFVTELTRFPYTSAFVLAFITVAAAAVRFRRLSKPTSFTMSSSSVNDPVQRNRIFSSKLYFDVPRSKVPIIYSASYDISFLGIEKLHPFDSSKWGRVCRFLVSFGVLDKKCIVEPLEASKDDLLVVHSESYLNSLKESSNVATIIEVGGTILSAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFALVRLNISRVMIIDLDAHQGNGHETDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTLTEDYLQKLDEALEVAGRSFDPELIVYNAGTDILDGDPLGRLKISPDGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLSKKCLIEDKQDS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4041 366 Gene3D Histone deacetylase domain 75 365 IPR037138 -
Amo16g4041 366 PANTHER HISTONE DEACETYLASE 11 49 364 - -
Amo16g4041 366 PRINTS Histone deacetylase superfamily signature 175 198 IPR000286 -
Amo16g4041 366 PRINTS Histone deacetylase superfamily signature 209 224 IPR000286 -
Amo16g4041 366 PRINTS Histone deacetylase superfamily signature 286 296 IPR000286 -
Amo16g4041 366 PANTHER HISTONE DEACETYLASE 11 49 364 - -
Amo16g4041 366 CDD HDAC_classIV 94 354 IPR044150 GO:0004407|GO:0016575
Amo16g4041 366 Pfam Histone deacetylase domain 152 352 IPR023801 -
Amo16g4041 366 SUPERFAMILY Arginase/deacetylase 72 354 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4041 Amo-Chr16 152638032 152643268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4041 K11418 - gmx:100781276 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4041 16 152638032 152643268 Amo16g4041 16 152638032 152643268 ECH