Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4029 ATGGCTTGGAGGCCTTTATTAACGCAGGTTTCAAGGCGACAATTAGAATTTGGACAGGCAAAACATTTGTTTCTTAGAGGCCATTTTTCCATTAATAAGTTCAGAGATTGTGCAGGGAATAGGCTTTTGCCCACCCAGGAGAGATTCAAGTCCAGCTATGTTGGCGATTTCAACCGTCGAATACGTGATGCAGATGAAGCTGTTGAAATTTCTCATCTGAAAGAACTTTACCATCGAAATGAACCTGAAGCTGTAATTAGGTTATTTGAAAGTCAGCCATCTCTGCATGCTAATCCTTCAGCACTTTCCGAATATATTAAAGCATTAGTTAAAGTTGATAGGCTGGATGAAAGTGAATTATTGAAGACATTGAGAAGAGGTATGCCCAATGCAGTGAGGGAGGAAGAAAGCATAGATGGCTTCTCTTCTCTTAGAAATATGCGGGGGCAAGAAAGTATAGGTGGTTTCTCTACTTTTAGAAATCTGGGAACACCTGCAAGAGAGAGAATTCTTGGGACTGCAAGTTCACCCGTTCATATGGTGGCTACAGAAGCGGCGAGTTTTAAAGATCGACTATGGCGTGCATTTAGGTCCATTGTAGTTGTTTTTTTGTTGATTTCGGGTGCAGGAGCTCTCGTAGAGGATAAAGGAGTTGGTCAAGGGCTTGGTGAACATGAAGGAGTGCTACCCAGCATGGAGTCAAGTACAAGATTTAATGATGTAAAAGGTGTTGACGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCACTACCTCCGGGATCCTAAGCGCTTTACTCGGCTTGGTGGTAAGCTTCCAAAAGGAGTGTTGCTTGTTGGTCCACCTGGAACTGGAAAAACTATGTTGGCAAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTCTTCTCAAGCAGTGGAAGCGAATTTGATGAGATGTACGTGGGTGTAGGTGCACGAAGGGTCAGGGATCTTTTTTCCGCTGCTAGGAAGCGATCACCTTCTATAATCTTCATTGACGAGATAGATGCTATTGGAGGGAACCGAAGTGCGAAGGACCAAACTTACATGAAGATGACATTAAATCAATTGCTGGTTGAGTTAGATGGATTCAAACAAAATGAAGGCACAATTGTGATTGGAGCAACTAATTTTCCAGAGTCATTGGATAAGGCTTTGGTGAGACCTGGTCGATTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGACGGCAGATTTTGGAGTCGCACATGTCAAAGGTTATGATGGCTGATGATGTTGATTTGATGGTCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAATGTAGGCGCCCTTAAGGCTGCAATGGACGGTGCTAAAGCTGTGACCATGGCCGATTTAGAGTATGCAAAGGACAAGATCATGATGGGAAGTGAACGCAAGACAGCCATCATATCTGAGGAATCGCGAAAGTTGACTGCTTACCATGAGGGTGGCCATGCCCTTGTGGCCATTCACACCGATGGGGCCCTTCCTGTTCACAAGGCGACAATAGTTCCCCGAGGGATGGCCCTCGGCATGGTTACTCAATTACCCGAGAAGGATGAGACCAGCATATCCCGTAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCCGGGTAGCAGAAGAGCTCATTTTCGGGGCAAACGAAGTTACTGCTGGCGCGTCGTCCGACCTCAAGCAGGCGACTAAGCTAGCAAGGGAAATGATTACTAAATATGGTATGGGAAAGGAGACTGGACTTGCCACTCACAATTACAATGATGATGGGAGAAGCATGAGCTCAGAGACAAGGCTTCTTATTGAGAAAGAGGTGAAGCATTTCTTGGAGAGAGCTTACAACAATGCAAAAACAATTCTAACCACTCACAACAAGGAACTCCATGCTCTTGCAAATGCTCTTCTTGAACATGAGACCCTTTCAGGAACTCAGATAAGAACACTTCTTGCTCAAGTTAGATCCCAGAAACAGCAGCAGCAGCAGCCGCACATGGTCGAAGTGCAGAGCAGTTCGCCGTCCAGCACAGCAGCTTCTGCTGCTGCCGCCGCAGCTGCTGCGGCTGCTGCTGCCACTGCCGCCGCCAAGTCTCAAGGTGTTCCAGTTGGATCTTAG 2166 0.4649 MAWRPLLTQVSRRQLEFGQAKHLFLRGHFSINKFRDCAGNRLLPTQERFKSSYVGDFNRRIRDADEAVEISHLKELYHRNEPEAVIRLFESQPSLHANPSALSEYIKALVKVDRLDESELLKTLRRGMPNAVREEESIDGFSSLRNMRGQESIGGFSTFRNLGTPARERILGTASSPVHMVATEAASFKDRLWRAFRSIVVVFLLISGAGALVEDKGVGQGLGEHEGVLPSMESSTRFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSSSGSEFDEMYVGVGARRVRDLFSAARKRSPSIIFIDEIDAIGGNRSAKDQTYMKMTLNQLLVELDGFKQNEGTIVIGATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVMMADDVDLMVIARGTPGFSGADLANLVNVGALKAAMDGAKAVTMADLEYAKDKIMMGSERKTAIISEESRKLTAYHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPEKDETSISRKQMLARLDVCMGGRVAEELIFGANEVTAGASSDLKQATKLAREMITKYGMGKETGLATHNYNDDGRSMSSETRLLIEKEVKHFLERAYNNAKTILTTHNKELHALANALLEHETLSGTQIRTLLAQVRSQKQQQQQPHMVEVQSSSPSSTAASAAAAAAAAAAAATAAAKSQGVPVGS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4029 721 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 43 700 - -
Amo16g4029 721 CDD AAA 272 404 - -
Amo16g4029 721 ProSitePatterns AAA-protein family signature. 375 393 IPR003960 GO:0005524|GO:0016887
Amo16g4029 721 Gene3D - 224 405 IPR027417 -
Amo16g4029 721 MobiDBLite consensus disorder prediction 674 696 - -
Amo16g4029 721 SUPERFAMILY FtsH protease domain-like 486 670 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g4029 721 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 229 667 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo16g4029 721 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 671 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo16g4029 721 Gene3D - 406 479 - -
Amo16g4029 721 PANTHER METALLOPROTEASE M41 FTSH 43 700 - -
Amo16g4029 721 SMART AAA_5 271 407 IPR003593 -
Amo16g4029 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 475 IPR027417 -
Amo16g4029 721 Pfam AAA+ lid domain 427 470 IPR041569 -
Amo16g4029 721 Pfam Peptidase family M41 486 665 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g4029 721 Pfam ATPase family associated with various cellular activities (AAA) 275 404 IPR003959 GO:0005524|GO:0016887
Amo16g4029 721 Gene3D Peptidase M41 480 679 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4029 Amo-Chr16 152481008 152486053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4029 65 667 Miscellaneous Gene Families AT5G53170 50.081 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4029 K08955 - jre:109020493 1035.4