Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4000 ATGGGTGAGGCTCCTCAACTTCTCTATGTTAATGGTTTTTCAAAATTTTGCCATGAAACTCAACAAACCCATGGCAATGGTATTCTTCATAATAATAATAATAACCACCATGAATTCTCAAGGTTTGGCCCTGAAAATCAACAGAATGGAAGTAATGGTAACTATGATTCCTCATCATGGTATGAGGAAGTCATTGATGATGATCTCAAATGGTCCTTCAAACTCAATAGGGTCCTCCACAAAGGGGTTAGCAAGTACCAAGACATAGCTCTTTTGGATACAAAGCGTTTTGGAAAGGCTTTGATGATTGATGGAAAGATGCAGAGTGCTGAATCAGATGAGTTTATTTATCATGAATGCTTGATTCATCCCTCCCTTTTATGCCACCCCAACCCCAAAAAGGTGTTTATTATGGGAGGAGGTGAAGGTTCTGCTGCTAGGGAAGCTCTCAAACATAAGACAATAGACAAAGTTGTCATGTGCGACATAGACCAGGAGGTGGTAGATTTCTGTAGGAAATATTTGACTGTGAATAGGGAGACATTTTATCACAGGAAGCTTGACCTTGTCATCAATGATGCCAAGGCTGAGTTGGAGAAGAGAAAGGAAAAGTATGATGTGATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACCAAATCCTTTTATGAGAAAATCTTGAAGCCCAAGCTCAATGATCATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGTATATTCACACACAAGGAGGTCTTCACTTCCATATATAACACAATCAAACAGGTCTTCAACTATGTGATGGTATATTCCACTCATGTACCATCTTTTGCTGATACATGGGGATGGGTTATGGCTTCTGATGAACCATTATCAATTGGTGCTGAGGAAATGGACAAAAGAATCAAAGCAAGGATAGATGGAGAATTGCTTTATCTAAATGGTGCTTGGTTCCAATCAGCTGCTACCATGAATAAGACTGTTTCACAATCGTTGAAGAACGAAAGTCACGTGTACACAGAAGAAAATGCTAGATTTATTCCTGGGCATGGTGTGGCTTATCGTCTCTAA 1092 0.4038 MGEAPQLLYVNGFSKFCHETQQTHGNGILHNNNNNHHEFSRFGPENQQNGSNGNYDSSSWYEEVIDDDLKWSFKLNRVLHKGVSKYQDIALLDTKRFGKALMIDGKMQSAESDEFIYHECLIHPSLLCHPNPKKVFIMGGGEGSAAREALKHKTIDKVVMCDIDQEVVDFCRKYLTVNRETFYHRKLDLVINDAKAELEKRKEKYDVIVGDLADPLEDGPCYQLYTKSFYEKILKPKLNDHGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFNYVMVYSTHVPSFADTWGWVMASDEPLSIGAEEMDKRIKARIDGELLYLNGAWFQSAATMNKTVSQSLKNESHVYTEENARFIPGHGVAYRL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4000 363 Hamap Polyamine aminopropyltransferase [speE]. 59 340 IPR001045 GO:0003824
Amo16g4000 363 Pfam Spermidine synthase tetramerisation domain 60 111 IPR035246 -
Amo16g4000 363 PANTHER BNAA02G04280D PROTEIN 54 362 - -
Amo16g4000 363 Gene3D Vaccinia Virus protein VP39 111 362 IPR029063 -
Amo16g4000 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 339 IPR029063 -
Amo16g4000 363 MobiDBLite consensus disorder prediction 26 55 - -
Amo16g4000 363 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 58 295 IPR030374 -
Amo16g4000 363 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 54 362 - -
Amo16g4000 363 Pfam Spermine/spermidine synthase domain 114 292 - -
Amo16g4000 363 Gene3D Spermidine synthase, tetramerisation domain 58 110 IPR037163 -
Amo16g4000 363 CDD AdoMet_MTases 139 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4000 Amo-Chr16 152014806 152020207 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4000 K18787 - gmx:100784972 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4000 16 152014806 152020207 Amo16g4000 16 152014806 152020207 ECH