Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3890 ATGGCTCTGAACGACTTCTTCGCCGGCGAGATCGCGACGGAGCTCATGAAGATGCTGATAAGCATATCACGCAAGTCACTCCTCTGCAGAACAAGCGCTGATCAGCTCAGAACTTACATCAACGAACTACTCCCTACCATTCAAGAGATCAAGTACTCCGGCGTCGAGCTTCCCGCCGATAGGCAGCGCCAGCTCGACCGCTTTTCCGAGATTCTTCGCTCCGGCGTCGAGCTCTCACATAAGGTTCTTAATTCGAACCGGTGGAACGTGTACAAGAACTTGCAGCTAGCGAAGAAGATGGAGAAGCTTGAGAAGACCGTGTCACGGTTTGTGCAAGGTCCAATGCAAGCTCACATATTGGCTGATGTGCACCACGCCCGGGTCGAGATGGCCGAGAGGTTCGACCGGGTCGATGCGTCGAACCAGAGGCTAGAGCAGTACTTTAGTGCCATGAAGATAGGAGTGGGAGGAGGAGGGTGGATAGAGGAGGCTGTGAGCAGCATGGAGGTGGATGAGAGTGGGGTGGAGGGTAATTTGGGGAATTTAGGTGTAGGTTTGGAACTTGGAAAGAAGAAGGTTAAGGAAATGGTAATTGGAAGGAATGATATTTGGGTTGTTGGGATTTGTGGGATTGGTGGCTCGGGGAAGACTACACTTGCTAGAGAAGTATGCAAAGATGAACAAGTCAGAAGTCATTTCAAGGAAAGAATCTTGTTCCTAACAGTCTCACAATCTCCAAATGTTGAGCAACTAAGAGCAAAGATATGGGGTTTCATTATGGGAAACCAAGGCTTCATAAGTTCAAATTATGTTGTTCCTCAAAGAATGCCACAAACTGAATGCAGGAGTGAAGTTCAAAGATTGATTGTTCTTGATGATGTTTGGTCCCTCTCTGTGTTAGAATATCTTGTGTGCAGAGTACATGGTTGCAAGTTCATTGTGGTTTCGAGAGAGAGATTTCCAACAATTTTCAATGCTACTTATGAAGTGGAATTGCTGAGTAAAGAGGAAGCATTAGCTTTGTTCTGTCACCATGCTTTTGGTCAAAAATCAATTCCTTTGGATGCTGATAGCAATTTGGTCAACCAGGTTGTGACCGAATGTGGAAGGCTTCCGTTGGCTCTTAAAGTGATCGGAGCTTCATTGCGCGATCAGACCGAGATGTTCTGGGCTAGTGTCAAGAACAGGCTATCTCAAGGACAAAGCATTGGTGAATCCTATGAAATCAACCTCATTGATAGAATGGCAATCAGCACAAATCACTTACCAGAAATGATCAAAGAATGCTTTTTAGATCTTTGTTCATTCCCAGAGGATAAGAAGATTCCACTAGATGTTCTCACTAATATGTGGGTTGAAATCCATGATATTGATCAGAAAGAAGCTTTTGCAATTGTTGTGGAGCTCTCAAACAAGAATCTTCTCACATTAGTGAAAGAAGCTCGTGCTGGTGGCATGTATAGCAGCTGCTTTGAGATATCTGTTACTCAGCATGATATACTGAGAGACCTTGCTCTTAATTTGAGCAATCGCAGCAGCATCCGTGAACGCCGCCGATTAGTTATGCCTAAACGAGAAGATCACGGCCGACTGCCTAAACAATGGTTGAGATATAAGGACAGGCCATTTGAGGCTCAGATCGTTTCAGTTCACACAGGTGAAATGAAAGAAGAAGATTGGTGTCACCTTGAGTTTCCTAATGCCGAAGTTTTGATAATCAATTTCACATCCAATGAATACTACTTACCTCCCTTCATTGCAAAAATGCCAAATTTGAGGTCATTAATTATCATAAACTATAGTGCATCATATGCTTCCCTTCACAATGTATCAGTTTTTCAGAATTTGACCAATCTTAGAAGCCTTTGGCTTGAAAAAGTTTCAACCCCTCAATTATCAGGCACTATAATGAAAAGCTTAGGGAAATTATTCATAGTCCTATGCAAATTAAATAATAGTTTAGAGGGTAAAGAAGCAAACCTAGCACAAGCATTTCCTAACCTAAGTGAACTCACTCTTGATCATTGTGATGATGTTACTGAATTACCCTCAAGCATTTGTGAGATACATTCACTTCAAAACTTGAGTCTCACAAACTGTCACAATTTGACCAAATTGCCCTCAGAACTAGGCAAGCTAAGATCACTTGGGATACTAAGACTGTATGCTTGTCCAGAACTGAAATCACTTCCTAGTAGCATATGTGACATGATTAAGTTGAAGTATATAGACATATCTCAATGTGTTAACCTTGCAATGTTCCCTAATGAGATTGGAAAATTGGTGAATTTAGAGAAGATTGACATGAGGGAATGCCCTATGATTAAGAGTTTACCAAAATCAACAGTGTCATTGAAGAATCTGAGGCTTGTGATATGTGATGAGGAGGTACAAGAGGTTTGGAATGAGGTTGAGAAGGCAAAGCCAAATCTCCACATTAAAGTCTCAGAGCAATACTATGATTTGGATTGGCTTAAAGAGTGA 2484 0.4227 MALNDFFAGEIATELMKMLISISRKSLLCRTSADQLRTYINELLPTIQEIKYSGVELPADRQRQLDRFSEILRSGVELSHKVLNSNRWNVYKNLQLAKKMEKLEKTVSRFVQGPMQAHILADVHHARVEMAERFDRVDASNQRLEQYFSAMKIGVGGGGWIEEAVSSMEVDESGVEGNLGNLGVGLELGKKKVKEMVIGRNDIWVVGICGIGGSGKTTLAREVCKDEQVRSHFKERILFLTVSQSPNVEQLRAKIWGFIMGNQGFISSNYVVPQRMPQTECRSEVQRLIVLDDVWSLSVLEYLVCRVHGCKFIVVSRERFPTIFNATYEVELLSKEEALALFCHHAFGQKSIPLDADSNLVNQVVTECGRLPLALKVIGASLRDQTEMFWASVKNRLSQGQSIGESYEINLIDRMAISTNHLPEMIKECFLDLCSFPEDKKIPLDVLTNMWVEIHDIDQKEAFAIVVELSNKNLLTLVKEARAGGMYSSCFEISVTQHDILRDLALNLSNRSSIRERRRLVMPKREDHGRLPKQWLRYKDRPFEAQIVSVHTGEMKEEDWCHLEFPNAEVLIINFTSNEYYLPPFIAKMPNLRSLIIINYSASYASLHNVSVFQNLTNLRSLWLEKVSTPQLSGTIMKSLGKLFIVLCKLNNSLEGKEANLAQAFPNLSELTLDHCDDVTELPSSICEIHSLQNLSLTNCHNLTKLPSELGKLRSLGILRLYACPELKSLPSSICDMIKLKYIDISQCVNLAMFPNEIGKLVNLEKIDMRECPMIKSLPKSTVSLKNLRLVICDEEVQEVWNEVEKAKPNLHIKVSEQYYDLDWLKE* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3890 827 Gene3D - 413 504 IPR036388 -
Amo16g3890 827 Pfam NB-ARC domain 191 413 IPR002182 GO:0043531
Amo16g3890 827 PRINTS Disease resistance protein signature 205 220 - -
Amo16g3890 827 PRINTS Disease resistance protein signature 281 295 - -
Amo16g3890 827 PRINTS Disease resistance protein signature 368 382 - -
Amo16g3890 827 PRINTS Disease resistance protein signature 687 703 - -
Amo16g3890 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 433 IPR027417 -
Amo16g3890 827 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 824 IPR044974 GO:0006952
Amo16g3890 827 Gene3D - 180 322 IPR027417 -
Amo16g3890 827 Gene3D Ribonuclease Inhibitor 546 811 IPR032675 -
Amo16g3890 827 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 3 824 - -
Amo16g3890 827 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Amo16g3890 827 Gene3D - 332 411 IPR042197 -
Amo16g3890 827 SUPERFAMILY L domain-like 567 791 - -
Amo16g3890 827 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 133 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3890 Amo-Chr16 150700564 150705012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3890 573 801 Receptor kinase-like Gene Family AT1G08590 25.541 1.30e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3890 - - aprc:113874975 1273.46