Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3777 ATGTTCCAAGGAAACCCTCCTTCTTCTTCTGCTTCTTCTTCATACACAAACCCACAACCTTGTCAGCACCTTGCTGATTACAAGTTCAAGCATGGCTTCAATGGCTACAAAGCCATTCAGAAGCTCCTTGTAACAACCCCAATTGGGAAAACCACTGTGAAGAAACCAAACACAAAAGTACCAAGATGCAGCTATGGTTACTGTAAAAATGCCTCTGAGGGAAGGTTCTATTTATGCTTGATTTGTTCTTCATTCACTTGTTTGGATCACACCCGTTTGCACCCTCAATCTAATTCTGGTCATGATTTGTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGTAGTGATCAGATTTATGACCCTGATTTTGATCAAGTTGTTATGTCAAAGCACTCATTTCCAAAAGGTTTTGTTGTTACTGAGGATGAGAGCATTGGCCAGAGATTGATCAAGAGGAGGAGAATGCTTCCTGGGGTTGTTTTTGGATTGGATTTGCAAAGAACAAAATTGAGGGATCTGAGGGAAAAATCATGTTATCCAATGGGTTTGAGGGGTTTGAACAATTTGGGTAGCACATGCTTCATGAATTCTGTGCTGCAGGCTTTGCTACATGCTCCTCCTTTTAGGGACTATTTCTTGAGTGGTGGACACCATTCCGAGACTTGTTCGAGAAGAACAACAATGGCTGATCGGATTTGTTTGATTTGTGATGTCAATGATATCTTTTCAGCTGTGTTTTCGGGAGATCGAAATCCGTATAGCCCTGCTCAGTTTCTATACAGCTGGTGGCAGCATTCAGCAAATTTAGCAAGTTATGAACAGCAAGATGCTCATGAGTTTTTCATTTCATTGTTAGACGCACTCCATGAGACTGGGGGAAAAACAAAGAATGGAAGCAGAGGTCATGGAGACTGCGAATGTATTGCTCATAGGGTATTTTCGGGGCTATTGAGATCAGATGTGACCTGTATGGCCTGTGGATTCACCTCAACAACCTTTGACCCTTGTATGGATATTTCCCTTGATTTGGACACTAATTTCTCTTTAGCTGAAAAGGGTAAAAAGCTGATCAAACAGAATGAGGAAGGCAGTATGTCTACGCTTTTTGGTTGTTTAGATTTGTTCACTCGACTCGAGAAGTTGGGGTCCGACCAGAAACTCTACTGCCAGAATTGTAAGGAAAGGCAGGATTCGTTGAAGCAAATGTCTATTGGCAAGCTTCCATTGGTACTTAGTCTACACGTGAAACGTTTCGAGCACTCCTTTGTTAAAAGGTCGTCAAGAAAAATAGATCAGTACCTACATTTTCCTTTTTCATTGGACATGACCCCATACTTGTCCTCCTCAATCCTCAGAGCCAGACACGGAAACAGAATTTTCACTTTTGGGGGCAATGAATCAGATATGTTTTCCAAGTATGAGATCTTTGCAGTTGTGACACATTCAGGGACGCTCGAGTCCGGTCATTATGTTTCCTTCGTGCGGTTAAGGAGGCGGTGGTACCGATGTGATGATGCTTGGATTACCGAGGTCGATGAAGCGACAGTCAGAGCCTCGCAGTGTTATATGATTTTTTATGTGCAGAAAACACTCTACAGTAAAGCCGGCGAAGATCTTAGTCATGTGCCAAAGTCCCCTGAAAGAGATCTCTTTCTTCCTATTGTGGGGTGTTGCTAG 1686 0.4265 MFQGNPPSSSASSSYTNPQPCQHLADYKFKHGFNGYKAIQKLLVTTPIGKTTVKKPNTKVPRCSYGYCKNASEGRFYLCLICSSFTCLDHTRLHPQSNSGHDLFVDIERAELYCGVCSDQIYDPDFDQVVMSKHSFPKGFVVTEDESIGQRLIKRRRMLPGVVFGLDLQRTKLRDLREKSCYPMGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHHSETCSRRTTMADRICLICDVNDIFSAVFSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISLLDALHETGGKTKNGSRGHGDCECIAHRVFSGLLRSDVTCMACGFTSTTFDPCMDISLDLDTNFSLAEKGKKLIKQNEEGSMSTLFGCLDLFTRLEKLGSDQKLYCQNCKERQDSLKQMSIGKLPLVLSLHVKRFEHSFVKRSSRKIDQYLHFPFSLDMTPYLSSSILRARHGNRIFTFGGNESDMFSKYEIFAVVTHSGTLESGHYVSFVRLRRRWYRCDDAWITEVDEATVRASQCYMIFYVQKTLYSKAGEDLSHVPKSPERDLFLPIVGCC* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3777 561 Pfam Ubiquitin carboxyl-terminal hydrolase 188 529 IPR001394 GO:0004843|GO:0016579
Amo16g3777 561 SUPERFAMILY RING/U-box 20 128 - -
Amo16g3777 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 140 IPR013083 -
Amo16g3777 561 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 187 532 IPR028889 -
Amo16g3777 561 Pfam Zn-finger in ubiquitin-hydrolases and other protein 68 125 IPR001607 GO:0008270
Amo16g3777 561 ProSiteProfiles Zinc finger UBP-type profile. 43 140 IPR001607 GO:0008270
Amo16g3777 561 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 188 203 IPR018200 GO:0004843|GO:0006511
Amo16g3777 561 Gene3D Cysteine proteinases 181 537 - -
Amo16g3777 561 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 12 557 - -
Amo16g3777 561 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 557 - -
Amo16g3777 561 SUPERFAMILY Cysteine proteinases 183 531 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3777 Amo-Chr16 149189561 149193298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3777 188 529 Miscellaneous Gene Families AT2G24640 29.830 4.23e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3777 K11366 - gmx:100806347 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3777 16 149189561 149193298 Amo16g3777 16 149189561 149193298 ECH