Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3679 ATGTCGTCCTTCTTCACTCTCAGAAAATCCTCACCGTTAATCTACCGTTTCCCAATCCAACGGTCCTTCAAGATCCGCAACTCTTCAACAACCTCACCATCGTCCTCCTCCTCCCCTTCGGCACCGTCTCTCCTGAATCGTAGCAGCAGTAGCACCAACCCGCACTACACTCCTCCGCGGGGCTCCGGTCTCGGTCCTAATTGGGCTTGGGCCCTTGCCGCGGGCTCAGGCCTTGGGGTTCTCCTGCATTACCTCGCTAAGCCCAATTCCCAATTCGACTCTCCGTTCTTATCGAAATTACTGCCTTTTGTTGACTCGTGGTCAACTCCTCCTGGCAACGAAGTTGAGTCTGACCGTCGGTCCACACCGTCGTTGTTTACAAAACTGTCCCTTCCAGAAAGTTCTAGTTTCTTCCTTTTTGGAGATGCGTACAGAAGAAAGGTGTTTTTCAACTATGAGAAGCGGATACGGTTGCGAAGCCCACCCGAAAAGGTTTTTGAATACTTTGCTTCTTATCGTACCCCAGAAGGAGAACTACTTATGAAACCAGCGGATCTAATGCGAGCAGTGGTTCCTGTTTTCCCCCCATCTGAATCCCATCTTGTAAGAGATGGGTACCTGAAAGGAGAAAGAAGTCCCGGTCATTTACGGTGTGCTCCTTCGGAATTTTTTATGCTTTTTGATGTAAATGGTGATGGGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACACTACTCAGCATTCCAGAGTCGAGCTTTTCTATAGCATTTAAAATGTTTGATGTGGACAATAATGGGGAGATAAACAAGGAAGAATTCAAAAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAGCACAGAGATGGATTGCGAATTGGCCTAAAGGTGATTGATTCTGTGGAAAATGGAGGGATGTTGGAGTATTTCTTTGGTAAAGATGGAAATGAATGTCTCCAGCATGACAAATTCGTACAGTTTTTGAGAGATTTACATGAGGAAATCGTGAGGCTGGAGTTTTCTCATTATGACTACAAATCTCAAAAAACCATATCAGCCAAGGATTTTGGACTCTCCATGGTTGCTTCTGCTGACATAAGTCATCTAGACAAGTTGCTTGACCGGGTTGATCAGTTGGACAATGATCAACGTCTCAAGAATGTACGCATCACATTTGAAGAGTTTAAAAACTTTGCAGAGCTACGCAAAAAATTGTTACCATTTTCATTGGCGCTTTTCAGTTGTGGAAAAGTAAATGGTCTATTAACCAGAGATGATTTTCAGCGAGCTGCATCACAAGTATGTGGCATCTCTCTCTCTGACAACGTAGTTGACATTGTTTTCCATTTGTTTGATGCAAATTGGGACAGAAACCTAAGCGCAGATGAGTTTGTGAGAGTGTTACACAAGCGAGAAAGGGACATTGTACAGCCTGTGGAGGCAGGAATCTTTGGTTTCTTGTCTTGTTGCTGGAACTGTACGGATAATCTATCACGCTTTCGGTTGTTTTAG 1524 0.4409 MSSFFTLRKSSPLIYRFPIQRSFKIRNSSTTSPSSSSSPSAPSLLNRSSSSTNPHYTPPRGSGLGPNWAWALAAGSGLGVLLHYLAKPNSQFDSPFLSKLLPFVDSWSTPPGNEVESDRRSTPSLFTKLSLPESSSFFLFGDAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRTPEGELLMKPADLMRAVVPVFPPSESHLVRDGYLKGERSPGHLRCAPSEFFMLFDVNGDGLISFKEYIFFVTLLSIPESSFSIAFKMFDVDNNGEINKEEFKKVMALMRSHHRQGVQHRDGLRIGLKVIDSVENGGMLEYFFGKDGNECLQHDKFVQFLRDLHEEIVRLEFSHYDYKSQKTISAKDFGLSMVASADISHLDKLLDRVDQLDNDQRLKNVRITFEEFKNFAELRKKLLPFSLALFSCGKVNGLLTRDDFQRAASQVCGISLSDNVVDIVFHLFDANWDRNLSADEFVRVLHKRERDIVQPVEAGIFGFLSCCWNCTDNLSRFRLF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3679 507 SMART efh_1 253 281 IPR002048 GO:0005509
Amo16g3679 507 SMART efh_1 447 475 IPR002048 GO:0005509
Amo16g3679 507 SMART efh_1 219 247 IPR002048 GO:0005509
Amo16g3679 507 MobiDBLite consensus disorder prediction 26 58 - -
Amo16g3679 507 ProSitePatterns EF-hand calcium-binding domain. 262 274 IPR018247 -
Amo16g3679 507 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 504 - -
Amo16g3679 507 CDD EFh 222 279 IPR002048 GO:0005509
Amo16g3679 507 ProSiteProfiles EF-hand calcium-binding domain profile. 249 284 IPR002048 GO:0005509
Amo16g3679 507 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 504 IPR039800 GO:0005509|GO:0006851
Amo16g3679 507 Pfam EF hand 257 280 IPR002048 GO:0005509
Amo16g3679 507 Pfam EF-hand domain pair 424 472 IPR002048 GO:0005509
Amo16g3679 507 CDD EFh_MICU 254 475 - -
Amo16g3679 507 Gene3D - 344 491 - -
Amo16g3679 507 MobiDBLite consensus disorder prediction 26 60 - -
Amo16g3679 507 SUPERFAMILY EF-hand 342 475 IPR011992 -
Amo16g3679 507 Pfam EF hand 223 240 IPR002048 GO:0005509
Amo16g3679 507 Gene3D - 194 287 - -
Amo16g3679 507 SUPERFAMILY EF-hand 222 474 IPR011992 -
Amo16g3679 507 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3679 Amo-Chr16 147724112 147728197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3679 50 440 EF-hand Containing Proteins AT4G32060 65.473 1.55e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3679 K22827 - gmx:100806575 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3679 16 147724112 147728197 Amo16g3679 16 147724112 147728197 ECH