Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo16g3633 | ATGGATGAATCATCGAAGGTGAGTTGCATGGTGGTTGGAGACCCTGGCCAGGAAAAAGGATGGAGTGGTATGGGAATGGGTGTGCCAAACTTGGATGCCAAACGATTTGCAGCAGAGTTTCTGTCCTTGTATTGCAGTGGAGTAGACCAGATTCGTTTGTCGTCGGAAATGAAAGAAGATACTCATACCAGACATTGTTCTCTTACATTAGTAGATAAAAATATTAGCTTGGCGGAGAAGTGTGAGGACCCCACTAGTGAGCCACATTATGGTAGTGAAAACATCTCTAGTGATGATATTCCTAAAGAAATCTGTTCTGGTGTTGTTGGTAGTGACCCGAGCCTTCGAAAATGTACCCATACACCTACTTCAAGTATGAATCCTGCTGAATTTAATACACCAGGATCCTTGGTTGTCAAAGCATGTGTCAAGGAGACTCCAAAGTCAACACGTGGAAGCTCAAGTTTTTCACCTGGCTCAGCTTTTTGGAATGAAGCGATTCAAGTTGCTGATGGTTTGTGTGTTCCTGTGACTAATGATTCTTCTATTGTTATGCACAAGATTAATGTGGTGGATGAGCAACATGAAATGGAGAATTCATCTAATTTACAAAGTCATGATGGAAAGCTGAGGGAAGTAATGGATCAATGCAAAAGCAGATTTTGGAAGGGGGAAGCGGGGATGCACACCAAAGATTCCAAGAAAGAAGTCTCTGTTCTTCCTGTGAAGCATTTTGATTTTTCATTTGAGGATAATATTTTGGGTGAAAGTACCCTGCAAGATCGTGGTGTTGGTAATCTGACTAATGTTACTTGTGAGGGTGGTAGACAGTATGAGTGTGGTTCTGTAACAGATCATAGATATCAAAAGATTGATGAAGGGAAGGAGAAGCCTTTAGTAGATGCAGTATGCAAAAGAATGAATTTTTCAAGTCAGGATAATATTAGTATGACATTTAATTCACCCCTCAATGAGGTTGCAATGGCAGTTAATACACATAAATCTGATGAAGCTTGTACTCCGTCAAGTAGTCTGTCGTTTAAGAATCATTTAGAGCTAAACAGCTGGCTTCCACCTGAAATATGCAGTATATATAGAAAGAAAGGAATCTCAAAGCTTTATGAATGGCAGGTTGACTGTCTTCGGGTGGATGGTGTCCTTCAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGTGCTGGTAAGAGTATCGTTGCTGAGATTTTAATGCTGCGGAGGGTGATATCTACTGATAAAATGGCAATACTTGTTCTTCCATATGTGTCAATCTGTGCTGAAAAGGCAGAACACCTTGAACGTCTTCTTGAGCCACTTGGTAAATATGTTCGTAGTTATTTTGGGAACCAAGGTGGTGGAACACTTCCTAAAGACACTTCTGTGGCTGTTTGCACGATAGAGAAGGCAAACTCCTTAATCAATAGATTATTGGAAGAGGGCCGTTTATCAGAGATGGGAATTATTGTGATAGATGAGTTGCATATGGTTGGTGATGCAAATAGAGGTTATCTTCTGGAACTCATGTTGACAAAACTTCGTTATGCGGCAGGGGAAGGTATTTCAAAATCAAGTGAAGGAGAAAGTTCAGGTGGAAGCAGCGACAATTCTGATCCTGCTCAAGGTCTGCAAATTGTTGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACAGAATTCCGGCCAGTTCCTTTAGAAGAATATATAAAAGTTGGTAATTCCATATATGACAAGAGTATGGAACTTTCTAGAACAATCTCAAAGGCAGCTGATCTTGGTGGTAAAGATCCAGATCATGTTGTTGAGCTTTGTAATGAGGTTGTTCAAGAGGGACAATCAGTCTTAATATTTTGCTCTAGTCGAAAGGGTTGTGAATCGACAGCAAGGCATGTTGGAAAGTTCCTTAAAAGCTTTATTGCTAATATTCAGGAGAACGACTGTGAGTTTGCTGATATTACTTCTGCTATCGACTCGTTGAGAAAGTGTCCTGCTGGGTTGGATCCCATATTAGAGGAAACCCTTCCTTCGGGTGTTGCATTTCACCATGCTGGCCTCACGGTTGAGGAAAGAGAGATAATTGAAACCTGTTACCGAAAAGGACTTTTACGTGTTTTAACTGCCACATCAACCTTAGCGGCTGGGGTTAATCTGCCAGCTAGGAGGGTTATTTTCCGCCAGCCTAGAATTGGTCGTGATTTTATAGATGGGACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGTACTGGAATTGATACAAAAGGAGAAAGTGTACTTATCTGCAAACCAGAAGAGGTAAAAAGAGTTATGGGGCTTCTTAATGAAAACTGTCCACCATTACATTCCTGTTTATCTGAAGATGTGAATGGAATGACTCATGCAATCTTAGAAGTTGTGGCTGGTGGAATAGTTCAAACAGCTAGTGATGTTCATCGCTACGTTAGATGTACTCTTTTGAACTCCACAAAACCATTCCAAGATGTGGTAAAGTCTGCACAAGAATCCCTCCGCTGGTTGTGCCAAAGAAAGTTTCTTGAATGGAATGAAGACACTAAACTTTACAGTACAACACCTCTTGGACGTGCATCATTTGGCAGCTCTCTCTCTCCAGAAGAATCACTTATTGTGCTCGCTGACCTTTCAAGGGCTAGGGAAGGATTTGTCCTCGCATCTGACCTGCACTTAGTTTACTTGGTCACTCCAATCAATGTTGATGTTGAGCCAGATTGGGAATTGTACTATGAGCGATTTGTGAAATTGTCTCCACTTGACCAGTCAGTTGGTAATCGAGTAGGTGTGACGGAACCATTCTTGATGCGTATGGCACATGGGGCACCTATACGTTCTTATAACAAGTCAAGTGACAGTACAAGAGGGATAAACAATAAACGAGGAAATCAACTCGGGATCTCTGATGCAACTGCACTCTCAGATGATCAAACACTTCGTGTTTGTAGACGATTCTATGTTGCTCTTATTTTGTCACTGCTAGTTCAGGAAACTCCTGTGGGCGAGGTTTGTGAAGCATATAAAGTTGCCAGAGGAATGGTTCAAGCCTTGCAAGAGAATGCTGGAAGGTTTGCATCTATGGTTTCTGCATTCTGTGAGAGGCTTGGCTGGCATGATCTTGAAGGCTTAGTTGCTAAATTTCAGAATCGTGTGTCATTTGGAGTCAGAGCAGAGATTGTAGAGCTTACTGCCATTCCCTATGTTAAAGGTTCTCGAGCTAGAGCACTCTATAAAGCAGGTTTACGAACACCTCTTGCAATTGCTGAAGCTTCGGTACCAGAAATAGTTAAGGCGCTTTTTGAATCTTCATCATGGGCAACAGAAGGTTCTGCGAAACGGAGTTTACAATTTGGTGTGGCGAAGAAGATCAAGAATGGTGCTCGAAAGATTGTTCTTGATAAAGCTGATGAGGCAAGGGTTGCTGCTTTCTCAGCATATAAGTCACTTGGATATGATGTCCCACAGTTTGCTCCTCCCATATTTACTGCTGCTTCTGATTCTACCAAGAAAGAAGCTGGAAGTAACTCTGGAAGTGACACAGCTCACACTAGTCATAGTTTTGTTGATGCAGTCCACAATGATAGTTCTAATGAAGTTGCTTTAGCAAGACAGAGACAAGATTCTGAAAATGATGCTCTAGTTTATCTGAAAGGAAAACCAATCAGTGAGGTTCCATTTAATTTTTCTACTGAAAATTCTGAAGCTCCAGTTATTGGATCTATAAGAAATGAGCCCAATGCTACTTTTGACCCTACCAAGAATGTATACCTGCCCACTCTCTCTGATCAGTTACAGAATCCAACTGATACCACCGTCATACATGATGGGTGCCTAGCTCGTGGTTCAGAGGACCAACATCATAGTAGAATTTTAGCAAGTGGAAATATGGAAAGTTCCACCCAGAGAGGTCCCATTAATGCAGGTAGTAGTCCTGGTGGGATTGATTCATTTCTGGATCTATGGGAAACTTTGCCAGAGTTCTACTTTGATATCCACTATATCAAACGATTGGAACTACACTCTCCTGCTCCTTTTGAAATACATGGCATAGCCATCTGTTGGGAATGCTCTCCTGTATACTACATTAACCTTCCCAGGGATATTTTGTTGTCTATGGGTAAAAGCGATGACAGTTTATCCTTGAGTGCATGCAGTCACAAGCTGAAAGTTTCATCTTCTAATTCTAAGCATGATTTGGAGATTGCCAAGGATAGATGGAGCAGGATTAGTAAAATATTAGGAAAAAGAGATGTCAAAAAGTTCACTTGGAATTTGAAGATTCAAATTCAGGTTTTAAAAAAGCCTGCAGTTTCACTTCAGAGGTTTGGTTGCTCTTACAATCTCGGAAATAATGAAGACTTTGAAATTGTAGATAGTTCATATGTATTGCTACCACGTGTCCTCATTAAAGATGTAATTGACATGTGTATTGTGACTTGGATACTGTGGCCTGATGAAGAGAGGAGCTCAAATCCAAACCTGGAGAAGGAGGTAAAGAAGAGGTTATCCTCTGAGGATGCTGCAGCTGCTAATCAGAGTGGCAGGTGGAAGAATCAGATGCGAAGAGCTGCACATAATGGTTGCTGCCGACGGGTTGCTCAAACAAGAGCATTATGTTCTGTTCTTTGGAAATTACTTGTTTCTGAAGAACTTGTTGAAGTGCTTATGAGAATAGAAATCCCTTTGGTAAATGTTCTTGCTGACATGGAGCTATGGGGAATTGGTGTCGACTTGGAGAGATGCATTCAGGCTCGTAAATTGTTGGTGAAAAGGCTGAAGTATCTTGAAAAGGAAGCTTATAAGCTGGCTGGGATTACATTTTCATTGAATATGCCAGCAGACATTGCAAAGGTGCTCTTTGAACACTTGATGCTGCCTATTCCTGATGGCCGAAATAAGGGGAAAAAACATGCAAGTACTGGAAAGCAATGCTTGGATGCATTAAGGCATGTACATCCCATTGTTCCAATCATTAAAGAGCATCGAACAATGGCAAAGCTCTTGAACACTACACTTGGATCAATTTGTTCTCTAGCTAGGCTATCGGTAAGCACACAGAAGTATACATTACATGGGCATTGGCTTCAGACATCTACAGCAACTGGTCGACTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAACATACAGTAGACTTCAAAATGGAAGAGGATAAAAGCGAAGGAGATGCTGATGAAAATCATTACAGCATTAATGCTCGTGATTTCTTTATTCCTACTCAGGACAACTGGTTACTGTTAACAGCAGACTATTCTCAAATAGAATTGAGGGTGATGGCACACTTCTCTAAAGACTCTTCTCTCATTGAGCTTCTCAGTAAGCCTGATGGTGATGCCTTTACAATGATAGCGGCAAGGTGGATTGGGTGTGCAGAGGATTCTGTCAGCTCCAATGAGAGAGATCAGACTAAAAAGATGGTTTATGGAATTCTTTATGGAATGGGTGCCAATAGCCTTGCTGATCACCTTGATTGCACTTCTGATGAAGCTGCAGAAAAGATTAGTTATTTCAAAAGCTCTTTTCCTGGTGTTTCTTCTTGGCTCAATGAAGTTGTTTCATCTTGTCGTCTCAAAGGATATGTCGAGACTCTTAAGGGAAGAAAACGATTTTTGTCTAAAATAAAATTTGGCAACAGTACAGAAAAATCAAAAGCTCAAAGGCAAGCTGTGAATTCCATTTGTCAGGGATCTGCTGCAGATATAATCAAGATTGCAATGCTAAGAATTTACTCCGTGATTGTCGACAGTGTTGATGGTTCGGATTCTAGTTCTTCTATGGCAACCAAGTTTCACATGCTCAGAGATCGTTGCCGAATTTCATTACAGGTGCATGATGAGTTAGTGCTGGAAGTTGATCCTTCGGTGATAAGGGAAGCTGCCGCGCTGTTAAAGACAAGCATGGAGAATGCAGTCTCACTTCTTGTTCCTCTTCGTGCGAAAGTCAAAGTTGGGAGAACATGGGGATCTTTGGAGGCATTTGCACCGGACAGATAA | 6072 | 0.4142 | MDESSKVSCMVVGDPGQEKGWSGMGMGVPNLDAKRFAAEFLSLYCSGVDQIRLSSEMKEDTHTRHCSLTLVDKNISLAEKCEDPTSEPHYGSENISSDDIPKEICSGVVGSDPSLRKCTHTPTSSMNPAEFNTPGSLVVKACVKETPKSTRGSSSFSPGSAFWNEAIQVADGLCVPVTNDSSIVMHKINVVDEQHEMENSSNLQSHDGKLREVMDQCKSRFWKGEAGMHTKDSKKEVSVLPVKHFDFSFEDNILGESTLQDRGVGNLTNVTCEGGRQYECGSVTDHRYQKIDEGKEKPLVDAVCKRMNFSSQDNISMTFNSPLNEVAMAVNTHKSDEACTPSSSLSFKNHLELNSWLPPEICSIYRKKGISKLYEWQVDCLRVDGVLQRRNLVYCASTSAGKSIVAEILMLRRVISTDKMAILVLPYVSICAEKAEHLERLLEPLGKYVRSYFGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDANRGYLLELMLTKLRYAAGEGISKSSEGESSGGSSDNSDPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYDKSMELSRTISKAADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHVGKFLKSFIANIQENDCEFADITSAIDSLRKCPAGLDPILEETLPSGVAFHHAGLTVEEREIIETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICKPEEVKRVMGLLNENCPPLHSCLSEDVNGMTHAILEVVAGGIVQTASDVHRYVRCTLLNSTKPFQDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLSPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFVKLSPLDQSVGNRVGVTEPFLMRMAHGAPIRSYNKSSDSTRGINNKRGNQLGISDATALSDDQTLRVCRRFYVALILSLLVQETPVGEVCEAYKVARGMVQALQENAGRFASMVSAFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTAIPYVKGSRARALYKAGLRTPLAIAEASVPEIVKALFESSSWATEGSAKRSLQFGVAKKIKNGARKIVLDKADEARVAAFSAYKSLGYDVPQFAPPIFTAASDSTKKEAGSNSGSDTAHTSHSFVDAVHNDSSNEVALARQRQDSENDALVYLKGKPISEVPFNFSTENSEAPVIGSIRNEPNATFDPTKNVYLPTLSDQLQNPTDTTVIHDGCLARGSEDQHHSRILASGNMESSTQRGPINAGSSPGGIDSFLDLWETLPEFYFDIHYIKRLELHSPAPFEIHGIAICWECSPVYYINLPRDILLSMGKSDDSLSLSACSHKLKVSSSNSKHDLEIAKDRWSRISKILGKRDVKKFTWNLKIQIQVLKKPAVSLQRFGCSYNLGNNEDFEIVDSSYVLLPRVLIKDVIDMCIVTWILWPDEERSSNPNLEKEVKKRLSSEDAAAANQSGRWKNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVEVLMRIEIPLVNVLADMELWGIGVDLERCIQARKLLVKRLKYLEKEAYKLAGITFSLNMPADIAKVLFEHLMLPIPDGRNKGKKHASTGKQCLDALRHVHPIVPIIKEHRTMAKLLNTTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHTVDFKMEEDKSEGDADENHYSINARDFFIPTQDNWLLLTADYSQIELRVMAHFSKDSSLIELLSKPDGDAFTMIAARWIGCAEDSVSSNERDQTKKMVYGILYGMGANSLADHLDCTSDEAAEKISYFKSSFPGVSSWLNEVVSSCRLKGYVETLKGRKRFLSKIKFGNSTEKSKAQRQAVNSICQGSAADIIKIAMLRIYSVIVDSVDGSDSSSSMATKFHMLRDRCRISLQVHDELVLEVDPSVIREAAALLKTSMENAVSLLVPLRAKVKVGRTWGSLEAFAPDR* | 2024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo16g3633 | 2023 | Gene3D | - | 586 | 786 | IPR027417 | - | |
| Amo16g3633 | 2023 | SMART | helicmild6 | 684 | 766 | IPR001650 | - | |
| Amo16g3633 | 2023 | SMART | ultradead3 | 369 | 588 | IPR014001 | - | |
| Amo16g3633 | 2023 | PANTHER | DNA POLYMERASE I | 373 | 2021 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 383 | 575 | IPR014001 | - | |
| Amo16g3633 | 2023 | Gene3D | - | 953 | 1097 | - | - | |
| Amo16g3633 | 2023 | CDD | DNA_pol_A_theta | 1592 | 2016 | - | - | |
| Amo16g3633 | 2023 | Pfam | DNA polymerase family A | 1599 | 2014 | IPR001098 | GO:0003677|GO:0003887|GO:0006260 | |
| Amo16g3633 | 2023 | SUPERFAMILY | DNA/RNA polymerases | 1570 | 2016 | IPR043502 | - | |
| Amo16g3633 | 2023 | Pfam | DEAD/DEAH box helicase | 386 | 559 | IPR011545 | GO:0003676|GO:0005524 | |
| Amo16g3633 | 2023 | Gene3D | - | 356 | 578 | IPR027417 | - | |
| Amo16g3633 | 2023 | SUPERFAMILY | Sec63 N-terminal domain-like | 994 | 1112 | - | - | |
| Amo16g3633 | 2023 | PRINTS | DNA-polymerase family A (pol I) signature | 1885 | 1896 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | PRINTS | DNA-polymerase family A (pol I) signature | 1863 | 1874 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | PRINTS | DNA-polymerase family A (pol I) signature | 1917 | 1933 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | PRINTS | DNA-polymerase family A (pol I) signature | 1709 | 1731 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | PRINTS | DNA-polymerase family A (pol I) signature | 1826 | 1851 | IPR002298 | GO:0003887|GO:0006261 | |
| Amo16g3633 | 2023 | CDD | DEXHc_POLQ-like | 357 | 578 | - | - | |
| Amo16g3633 | 2023 | Pfam | Helicase conserved C-terminal domain | 615 | 766 | IPR001650 | - | |
| Amo16g3633 | 2023 | Gene3D | - | 1328 | 1589 | IPR036397 | GO:0003676 | |
| Amo16g3633 | 2023 | Gene3D | - | 1780 | 1924 | - | - | |
| Amo16g3633 | 2023 | Pfam | Helix-turn-helix domain | 771 | 862 | IPR046931 | - | |
| Amo16g3633 | 2023 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 615 | 812 | IPR001650 | - | |
| Amo16g3633 | 2023 | CDD | SF2_C_Ski2 | 577 | 778 | - | - | |
| Amo16g3633 | 2023 | PANTHER | DNA POLYMERASE THETA | 373 | 2021 | - | - | |
| Amo16g3633 | 2023 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 386 | 780 | IPR027417 | - | |
| Amo16g3633 | 2023 | Gene3D | Taq DNA Polymerase; Chain T, domain 4 | 1592 | 1701 | - | - | |
| Amo16g3633 | 2023 | Gene3D | - | 1718 | 2013 | - | - | |
| Amo16g3633 | 2023 | SMART | polaultra3 | 1756 | 1981 | IPR001098 | GO:0003677|GO:0003887|GO:0006260 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo16g3633 | Amo-Chr16 | 147023860 | 147041976 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo16g3633 | K02349 | - | gmx:100813857 | 2997.61 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo16g3633 | 16 | 147023860 | 147041976 | Amo16g3633 | 16 | 147023860 | 147041976 | ECH |