Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3630 GGGAATCGTTCTGATGGCAAGACTCAAATGAATAACATTGTTAAGATTTTAAATTCCAGCAGCCAACCCAGCTGCGCGTTCTGCATTRATAAAARAAGTTGCCGSGTGGTACGCTCGAAAACAAAGWTAATGAATTTTCTGATAGAGAGAGGAAAATCTCAGGAAGCTATTCCCATGTTTGAAAATCTGATTGTAGAAGGGCACCAACCATCTCTAGTAACGTACACRACCCTTTTAAATGCCTTGACCAATCAAAAGTGCTTCAAGCCTATACATTCTATCGTCTCACAAGTGGAAGCMAAACACATGAAGCCCGACCCGGTATTTTATAATGCACTTATAAATGCATTTGCTGAATCCGGTAACATGGATGATGCCATGAAAACTGTCCAAAAGATGAAAGARAGTGGACTAAGACCAACCACTAGCACTTATAACACATTGATAAAAGGGTATGGTATTATAGGTAAGCCTGATGAATCGACGAAGTTGCTAGATCTGATGTTGGAAGATGCAAGGTTGAAACCAAATCTCAACACATATAACATGCTTATCAGAGCASGGTGTAAGCTGGAGAATATATCAGAGGCCTGGAATGTGATAAATAAGATGACTTGTTCGGGAATGCAACCAGATGTTGTTACTTTCAATACTATAGCAACAGCTTATGCTAACACAGGACAGACTGCTCAGGCCGAAGCGATGATTTTAGAGATGCAGAGGTATGGTTTGGAACCAAACGAGAGAACTTGCACAATCATCATAACCGGATACTGTAGAGAAGGCAAAGTAAAGGAAGCTCTTAGGATTATGTATAAGATGAAGGATCTGGGCCTGCAGCCAAATCTTATTGAATTCAACTCCCTGATTAATGGCTTTGCGGGTGTGATGGATAGAGATGGTGTTGATGAGGTTTTAAAGTTGATGGAGGAATTTCATGTTCGGCCAGATGTGGTTACATATAGTACAGTAATGAATGTATGGAGCCAAGCTGGATTCTTAGAGAAATGCAAACAAGTTTACGATGACATGTTGAAATCTGGTATAAAACCAGATATACATGCTTATAGYATTCTTGCTAAAGCTTATGTTCGAGCGCAAGAAGCAGGAAAGGCAGAAGAACTGCTGAATGCGATGGTCGAATCAGGCATCCAACCAAATGTTGTTTTGTTAACAACTATCATAAGTGGATGGTGCAGTTCTAAAAGAATGGACAATGCTGTCAGAGTCTTTGACAAGATGCGTGAGTTCGGTATTTCGCCAAATCTTAAGACCTTTGAGACGCTTATCTCAGGRTATGCTGAAGCAAMACAGCCATGGAATGCAGAAGGAATGCTCCAAATAATGGAAGATTTTCACATTCCACCCAAGAAATCCACAATCATGCTTGTTGCCGATGCTTGGCGAATGGCTGGATTAAGAGAAGAGGAAAATAGGTTGCTAAGTACCATAAAAAGACTGAAAACCAAGAAGATGCCGAATTCGACAGAGGAAGATGACAATATACCAGTTGAAAGCTTGGATAAAATTTACWAAAAGCCATTTACTAGTGTTCCCTTCTGTGGTCTCTTACAGASCCCATCTATAGGTTTCAATGATCAYAAAGCTTCGGCTTTCGCGACTAGAAGGAACCGAAGGCTTCTTAGAGATGGTGAATTGGAGACTTCACTTCTCACAGCAAGGTTTAAGCGTCATTCTCAAATGTATAGATTGGGAGAAGGATTTTCCATCATGTGCCAAAAGCAGTTTCAATGTCAACATGGTACATACCAACTTGCAAATTCATGTACAGCAGTATTCTACTAA 1806 0.3992 GNRSDGKTQMNNIVKILNSSSQPSCAFCIXKXSCRVVRSKTKXMNFLIERGKSQEAIPMFENLIVEGHQPSLVTYTTLLNALTNQKCFKPIHSIVSQVEAKHMKPDPVFYNALINAFAESGNMDDAMKTVQKMKESGLRPTTSTYNTLIKGYGIIGKPDESTKLLDLMLEDARLKPNLNTYNMLIRAXCKLENISEAWNVINKMTCSGMQPDVVTFNTIATAYANTGQTAQAEAMILEMQRYGLEPNERTCTIIITGYCREGKVKEALRIMYKMKDLGLQPNLIEFNSLINGFAGVMDRDGVDEVLKLMEEFHVRPDVVTYSTVMNVWSQAGFLEKCKQVYDDMLKSGIKPDIHAYSILAKAYVRAQEAGKAEELLNAMVESGIQPNVVLLTTIISGWCSSKRMDNAVRVFDKMREFGISPNLKTFETLISGYAEAXQPWNAEGMLQIMEDFHIPPKKSTIMLVADAWRMAGLREEENRLLSTIKRLKTKKMPNSTEEDDNIPVESLDKIYXKPFTSVPFCGLLQXPSIGFNDHKASAFATRRNRRLLRDGELETSLLTARFKRHSQMYRLGEGFSIMCQKQFQCQHGTYQLANSCTAVFY* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3630 601 Pfam PPR repeat 174 205 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Amo16g3630 601 PANTHER OS01G0228400 PROTEIN 2 600 - -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 319 353 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 144 177 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 109 141 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 250 282 IPR002885 -
Amo16g3630 601 TIGRFAM PPR: pentatricopeptide repeat domain 391 422 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Amo16g3630 601 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 600 - -
Amo16g3630 601 Pfam Pentatricopeptide repeat domain 93 153 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 171 IPR002885 -
Amo16g3630 601 Gene3D Tetratricopeptide repeat domain 300 504 IPR011990 GO:0005515
Amo16g3630 601 Gene3D Tetratricopeptide repeat domain 7 192 IPR011990 GO:0005515
Amo16g3630 601 Gene3D Tetratricopeptide repeat domain 193 299 IPR011990 GO:0005515
Amo16g3630 601 Coils Coil 470 490 - -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Amo16g3630 601 Pfam PPR repeat family 211 260 IPR002885 -
Amo16g3630 601 Pfam PPR repeat family 386 434 IPR002885 -
Amo16g3630 601 Pfam PPR repeat family 316 364 IPR002885 -
Amo16g3630 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3630 Amo-Chr16 146943997 146946464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3630 126 496 Glycosyltransferase AT1G05670 24.599 6.01e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3630 K17710 - gmx:100779093 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3630 16 146943997 146946464 Amo16g3630 16 146943997 146946464 ECH