Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3622 ATGGTGAATTCTATGGTGGAACGCGCCACGAGCGACATGCTCATCGGACCCGATTGGGCCATGAACATCGAGATCTGTGACATGCTCAATCGTGACCCTGGGCAAGCAAAGGATATTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAAACTCAAAAGTCCAGCTACTTGCTCTAACTTTACTGGAGACAATCATAAAGAACTGCGGAGACATTGTTCACATGCATGTTGCAGAGAAAGATGTGCTTCATGAGATGGTGAAAATAGCAAAGAAGAAGCCTGATTTTCATGTCAAAGAGAAGATACTGATTCTTGTAGATACATGGCAAGAAGCCTTTGGAGGTCCCCGATCAAGATATCCGCAGTATTATGCTGCATACCAGGAACTGCTGCGTGCTGGGGCAGTATTTCCCCAGAGATCTGAGCAATCTGCACCGGTGTTCACACCTCCACAAACACAGCCATTAGCATCATACCCTCCAAACATACGTGACTCTGATACTCGGCAGGACACAGCTGGTTCCTCTGCAGAGTCCGAGTTCCCAACATTAACTCTGACCGAAATTCAGAATGCACGGGGTATTATGGATGTTCTCTCAGAAATGCTAAATGCATTAGACCCTAGTAATAAAGAAGGTCTTAGGCAGGAGGTTATTGTTGACTTGGTGGAGCAGTGCCGAACATACAAACAGAGAGTGGTACACCTTGTTAACTCAACTTCTGATGAATCACTGCTTTGCCAAGGACTAGCTCTGAATGATGATCTGCAGCGTGTACTTGCCAAGCATGAATCTATTTTGTCAGGAACTCCTACTCAGAATCAAAAACCCCCAGAGAATTCAAAGCCTGCAACTGCTGGAGCACTTCTAGATGTTGATGCTCCTTTGGTTGATACTGGAAATTCTAGCAAACAAATTGATAGAAGCTCCCCTCCTAGTGCTGAAGCAGGATCCTCAACATTGAATCAGTTATTGCTTCCTGCACCCCCCACAGCCAATGGTTCAACCATCCCTGCCAAGGTTGATCCCAAATTCGACCTGCTCAGTGGTGATGACTATGCCTCACCAAAAGCAGATACTTCACTTGCTCTTGTTTCTCTTGGAGAACAACAGCCTGCTACTCCTGTGAATCAGCAGAACGCCCTTGTTCCTTTTGATGTATTTTCTAATGGTAATAATGCAGCAGCTACACCTGTCAGTACTCAGCTAAACCAGCCACCTAATTTTGCTGGCCAAACGAGTCAGATTCCTACCCAATTTCAACAACAGCAGAGTTTTGTATCTCAAGGTGGATTTTACCCCCAAGGAAGTGCACCAAACGCAGGGTCACCTCAGTATGAGCAGTCACTTTATACACAAAGTTCAGGTCCCGCCTGGAATGGTCAGGTTGCACAGCAGCCACAGCCATCTTCGCCTGTTTATGGCACACAAAACACTGGATCACTGCCGCCCCCTCCCTGGGAAGCTCAAGCGGCAGATAATGGCAGTCCAGCTGCAAGCACTCCATTTCCGCAACCACCACAAGTTAGTCAAGTGATGATGACAAATGGCGCCGCAAATTCTCAGGGCCCTCAAACAATGGGCAATGGCCAGGTTGCTGGAATATATATGCAGCCAACTGCCAACAGTTATACGCCAGCAATCAATAACCATGTTGGTCAACACAATCAATTCGGCATGCATCCTCAACATATTCAAGGCATGGCAGGGCCCTACATGGGTGGTATGATGCCAAATCAAATGCAAGCTGGTCCAGTGGCTTCCATGTATCCTCAACAAATGTACGGTAATCAATTTATGGGATATGGCTACGGTCAGCAACAAGGAGTTCCATATATTGAGCAGCAAATGTATGGTTTATCTGTTAGAGATGATGGTGGTTTAAGAAGCTCTTACCAGTCTTCTACTATATCTTATGCTCCATCTGGGAAGCCTTCCAAGCCAGAAGATAAGCTATTTGGTGACCTTGTTGACATGGCAAAGGTGAAGCCAAAACCTGCTCCAGGTCGAGCTGGTAGCATGTAA 2025 0.4617 MVNSMVERATSDMLIGPDWAMNIEICDMLNRDPGQAKDIVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAEKDVLHEMVKIAKKKPDFHVKEKILILVDTWQEAFGGPRSRYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPPNIRDSDTRQDTAGSSAESEFPTLTLTEIQNARGIMDVLSEMLNALDPSNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESILSGTPTQNQKPPENSKPATAGALLDVDAPLVDTGNSSKQIDRSSPPSAEAGSSTLNQLLLPAPPTANGSTIPAKVDPKFDLLSGDDYASPKADTSLALVSLGEQQPATPVNQQNALVPFDVFSNGNNAAATPVSTQLNQPPNFAGQTSQIPTQFQQQQSFVSQGGFYPQGSAPNAGSPQYEQSLYTQSSGPAWNGQVAQQPQPSSPVYGTQNTGSLPPPPWEAQAADNGSPAASTPFPQPPQVSQVMMTNGAANSQGPQTMGNGQVAGIYMQPTANSYTPAINNHVGQHNQFGMHPQHIQGMAGPYMGGMMPNQMQAGPVASMYPQQMYGNQFMGYGYGQQQGVPYIEQQMYGLSVRDDGGLRSSYQSSTISYAPSGKPSKPEDKLFGDLVDMAKVKPKPAPGRAGSM* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3622 674 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Amo16g3622 674 Pfam VHS domain 3 130 IPR002014 GO:0035091|GO:0043130
Amo16g3622 674 MobiDBLite consensus disorder prediction 142 179 - -
Amo16g3622 674 PANTHER TARGET OF MYB PROTEIN 1 1 668 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 494 510 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 266 285 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 296 318 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 396 510 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 632 653 - -
Amo16g3622 674 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Amo16g3622 674 CDD VHS 2 132 - -
Amo16g3622 674 CDD GAT_GGA_like_plant 188 266 - -
Amo16g3622 674 Gene3D - 183 275 IPR038425 -
Amo16g3622 674 Gene3D - 1 148 IPR008942 -
Amo16g3622 674 PANTHER TOM1-LIKE PROTEIN 1 668 IPR044836 GO:0035091|GO:0043130|GO:0043328
Amo16g3622 674 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Amo16g3622 674 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Amo16g3622 674 MobiDBLite consensus disorder prediction 298 318 - -
Amo16g3622 674 Pfam GAT domain 194 269 IPR004152 GO:0035091|GO:0043130
Amo16g3622 674 SUPERFAMILY GAT-like domain 141 269 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 396 484 - -
Amo16g3622 674 MobiDBLite consensus disorder prediction 266 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3622 Amo-Chr16 146858849 146865960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3622 - - gmx:100809022 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3622 16 146858849 146865960 Amo16g3622 16 146858849 146865960 ECH