Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3555 ATGGGTTCATATTCTCGGGGACGCGATTTCTTGTTCTGCCAATTGTGTGGCACCATGCTCACTATCCCTCTCAGGGCTTCGGATAAATACGCTCAGTGCCCTTTGTGCAAGGCTAAGCGAAACCTCAAACATATTCGCGGAAAGGAAATAAGTTACAAAATTTCTGCTGAGGATATAAGAAGAGAACTTGGAATCAATATAATCGATGAACAGAAGGTGCAATTGTCTAAGGTCAACAAGAAATGTGATAAATGTGGTCATGGTGAAGCTACCTTCTATACCAGACAGATGAGATCAGCAGATGAAGGGCAAACCACTTTCTACACATGTATCGGTTGTGGCTTTCAGTTTCAAGAGAACTAG 363 0.4242 MGSYSRGRDFLFCQLCGTMLTIPLRASDKYAQCPLCKAKRNLKHIRGKEISYKISAEDIRRELGINIIDEQKVQLSKVNKKCDKCGHGEATFYTRQMRSADEGQTTFYTCIGCGFQFQEN* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3555 120 PANTHER DNA-DIRECTED RNA POLYMERASE 7 120 IPR012164 GO:0006351
Amo16g3555 120 Pfam Transcription factor S-II (TFIIS) 81 118 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo16g3555 120 SMART Cys4_2 80 119 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo16g3555 120 CDD Zn-ribbon_RPA12 77 120 IPR034004 GO:0006379
Amo16g3555 120 PIRSF RNApol_RpoM 10 120 IPR012164 GO:0006351
Amo16g3555 120 ProSitePatterns Zinc finger TFIIS-type signature. 82 117 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo16g3555 120 ProSiteProfiles Zinc finger TFIIS-type profile. 78 118 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo16g3555 120 SUPERFAMILY Zinc beta-ribbon 63 120 - -
Amo16g3555 120 Gene3D - 59 120 - -
Amo16g3555 120 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 7 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3555 Amo-Chr16 145635843 145639429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3555 K03000 - zju:107420403 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3555 16 145635843 145639429 Amo16g3555 16 145635843 145639429 ECH