Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3542 ATGGCCACGCTTCAAGCTTCTCTTCTCTCTAAACCTTCCCTCCCATTCCCATTCTCATCTTCATACCCTTCACTTCGCCGCAACACAATTCTCTCTTTCCACTCCCTCACCTCATCCCATCCCCACCTCTCGCGCCTCCGCTCCCGTGTCCCCTGCACATTCCGCCCCGACAACAGCATTACCTCCTCTTCCGAACCCCAACCCAAACCCCAACCTCAATCCCAATTAACTAACTCCGAACCAGATTCCGCCGAACCTGATGCCGTTGACACCGGCGAGGTTCCAAATTCAAATTCAACGGAGGAAAAGATTGCAGTTTCGGATTGGAATGAGTCAAGTTTGGAACTTAGTTCCGAGAGTGTAGTGTCTGGCAGCGASAGTGAGGGGAAGYGTYCGAATCTGAAGAAGAAGAAAGATGAGGAGGGTGMTGGTGTTGGTTCCAGGTTGCCATTTTTGGTGTTTCTTCTTGGAATWTGGGTGAAAGTGAGAGAAGCGGTGAGAAGGGCATTTTCGGAATTTTTTGATTGGTGGCCGTTTTGGCGTCAGGAGAAGCGGCTGGCGAAGTTGATCGCCGAGGCCGAGGCYAACCCGCAGGATGCCGAGAAGCAGAGTGCTCTGTTTGTTGAGCTCAACAAGCACAGTCCTGAGTCTGTCATCAAGCGATTCGAACAAAGGGATTGTGCTGTAGACAGTAGAGGAGTCGCAGAGTATCTTCGAGCTCTTGTAATGACTAATGCTATCACCGAATATCTTCCAGATGAGGAAATTGGAAAGCCTTCTAGTCTTCCTACTCTGTTGCAAGAGTTAAAGCAGCGTGCATCAGGCAATGTAGATGAGACTTTTCTTAGCCCTGGAATATCTGAGAAGCAGCCATTACATGTGATAATGGTTGATCCAAAAACTTCAAACAAATCACGTTTTGCTCAAGAGCTCATTTCGACTATTTTGTTTACTGTTGCAGTGGGATTGGTCTGGTTTATGGGTGCTGCTGCACTTCAAAAATACATAGGAAGCTTGGGTGGCATTGGAACATCAGGTGTTGGGTCAAGTTCTTCCTATGCCCCAAAGGAGCTAAACAAAGAAGTTACGCCTGAAAAGAATGTCAAGACATTCAAGGATGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAGGTTGTGGAGTACTTAAAAAATCCCACCAAGTTTACACGCCTTGGAGGAAAGCTGCCTAAGGGTATTCTCTTGACAGGGGCACCAGGAACCGGAAAAACTCTTCTTGCCAAGGCTATAGCTGGAGAAGCCGGTGTGCCGTTTTTCTATCGGGCAGGGTCTGAATTTGAGGAGATGTTTGTTGGAGTTGGTGCTCGACGTGTAAGATCTTTGTTTCAAGCAGCTAAGAAAAAGGCTCCTTGTATCATTTTCATTGATGAAATTGATGCTGTTGGATCAACAAGGAAACAGTGGGAGGGTCATACTAAGAAGACATTGCATCAGTTACTTGTTGAAATGGATGGGTTTGAGCAGAATGAGGGAATAATATTAATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCCGGTAGATTTGATCGCCATATTGTTGTACCAAARCCAGATGTACGTGGTCGGCAAGAAATATTGGAGCTCTACCTACAAGATAAACCTCTGGCTGATGATGTAGATGTTAAAGCGATAGCCCGTGGTACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCGGTTGAAGGTGCAGAGAAACTAACAGCTGGACAATTGGAATTTGCAAAAGACAGAATAATCATGGGTACAGAGAGGAAAACAATGTTTATATCAGATGAATCTAAAAAGCTCACTGCTTATCATGAGAGTGGCCATGCAATCGTCGCCCTTAACACTGATGGTGCACATCCTATCCACAAGGCAACAATCATGCCCCGCGGCTCTGCTTTAGGGATGGTTACYCAGCTTCCATCAAGTGATGAGACATCAATTAGCAAGAAACAGTTGRTAGCTCGCCTTGATGTATGTATGGGAGGAAGAGTTGCAGAAGAGCTTATATTTGGTCATGATTATGTCACAACTGGAGCAAGTAGTGATCTTCACACAGCTACTGAACTTGCCCAYTATATGGTTTCAAATTGTGGGATGAGTGATGCAATTGGACCAATTCATATAAAAGAGCGGCCAAGTTCTGAAATGCAGTCGCGTATAGATGCAGAGGCAAGTGTTATGAATCTACTATCTATCTATCGTCTAAACCATTTTGACTTTGAAATATTGTTTCATTTCTTAAATGAAAAAACCACAATGCTTAAATTTACTTGTTCTGCAGGTTGTAAYACTTCTTAG 2376 0.4461 MATLQASLLSKPSLPFPFSSSYPSLRRNTILSFHSLTSSHPHLSRLRSRVPCTFRPDNSITSSSEPQPKPQPQSQLTNSEPDSAEPDAVDTGEVPNSNSTEEKIAVSDWNESSLELSSESVVSGSXSEGKXXNLKKKKDEEGXGVGSRLPFLVFLLGIWVKVREAVRRAFSEFFDWWPFWRQEKRLAKLIAEAEANPQDAEKQSALFVELNKHSPESVIKRFEQRDCAVDSRGVAEYLRALVMTNAITEYLPDEEIGKPSSLPTLLQELKQRASGNVDETFLSPGISEKQPLHVIMVDPKTSNKSRFAQELISTILFTVAVGLVWFMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVTPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPTKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPKPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLTAGQLEFAKDRIIMGTERKTMFISDESKKLTAYHESGHAIVALNTDGAHPIHKATIMPRGSALGMVTQLPSSDETSISKKQLXARLDVCMGGRVAEELIFGHDYVTTGASSDLHTATELAHYMVSNCGMSDAIGPIHIKERPSSEMQSRIDAEASVMNLLSIYRLNHFDFEILFHFLNEKTTMLKFTCSAGCNTS* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3542 791 MobiDBLite consensus disorder prediction 118 140 - -
Amo16g3542 791 CDD AAA 382 537 - -
Amo16g3542 791 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE YME1L1 144 756 - -
Amo16g3542 791 Pfam AAA+ lid domain 559 597 IPR041569 -
Amo16g3542 791 MobiDBLite consensus disorder prediction 47 105 - -
Amo16g3542 791 Pfam Peptidase family M41 618 743 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3542 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 634 IPR027417 -
Amo16g3542 791 MobiDBLite consensus disorder prediction 54 84 - -
Amo16g3542 791 ProSitePatterns AAA-protein family signature. 507 525 IPR003960 GO:0005524|GO:0016887
Amo16g3542 791 SMART AAA_5 404 539 IPR003593 -
Amo16g3542 791 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 318 744 IPR005936 GO:0004176|GO:0004222|GO:0016020
Amo16g3542 791 Pfam ATPase family associated with various cellular activities (AAA) 408 536 IPR003959 GO:0005524|GO:0016887
Amo16g3542 791 Gene3D - 538 611 - -
Amo16g3542 791 PANTHER METALLOPROTEASE M41 FTSH 144 756 - -
Amo16g3542 791 SUPERFAMILY FtsH protease domain-like 619 749 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3542 791 Gene3D Peptidase M41 612 761 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Amo16g3542 791 Gene3D - 348 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3542 Amo-Chr16 145408911 145419097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3542 2 756 Miscellaneous Gene Families AT5G53170 73.403 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3542 K08955 - gmx:100794322 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3542 16 145408911 145419097 Amo16g3542 16 145408911 145419097 ECH