Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3456 ATGCAAATGCAAATAAGTTCCTTGCGCACTCAAACTTTCTTGCATTTTTCACCCGCTCAAAAGTATGGCCGCCACATCATGCCATTGCCAAGAGCTGCCGCCATTGCGGCACCGCCTCCCTTGAAATCCAAGAAAACCCACTCCATGGCACCAGAAAAGATCGAGATTTTCAAGTCACTGGAAAACTGGGCCTCAGAATGTGTGCTACCGATGCTGAAGCCAGTAGAACAATGTTGGCAGCCACAGAATTTGGTGCCAGACTCATCGCAACCCTTTGATGAATTCACCGATGAGGTGAAGAATCTCCGGCAGCGCACTGCGGAGATTCCGGATGATTACTTTGTTGTGTTGGTGGGTGATATGATCACGGAGGAGGCTCTACCTACTTATCAGAGCATGATTAACAACCTAGATGGGGTTGGGGACGAGATCGGGTCAAGCCCAAACCCGTGGGCCGTGTGGACTCGAGCTTGGACGGCTGAAGAGAATAGACATGGGGATTTGCTCAGAACTTATTTGTATCTTTCGGGTCGGGTTGATATGTTGATGATCGAAAAAACAGTGCAATACCTCATTGGAGCTGGCATGGATCCAGGAACCGAAAACAATCCCTATTTGGGGTTTGTGTACACCTCATTTCAAGAACGAGCCACCTTCGTGTCACATGGAAACACAGCCCGGCTAGCAAAGGAGGGTGGTGATCCTGTGCTGGCTCGCATATGTGGGACCATAGCTGCAGATGAAAAGCGCCACGAAAACGCATATCAAAAGATTGTTGAGAAGCTTCTAGAAGTGGATCCCAGTGATGCAGTTGTTGCAATAGGAGACATGATGCAGAAAAAGATCACAATGCCAGCACACTTGATGTACGATGGGAGTGACCCTAAGTTGTTCGAGCACTTCTCCGCCGTGGCGCAGCGATTGGGCGTGTACACGGCCAATGATTATGCTGATATCTTGGAGTTCCTTGTTGGACGGTGGAGATTGGAGAAGCTAGAAGGATTGACGGCTGAGGGAAAACGAGCACAAGATTATGTGTGTGGGTTATCTCAGAGGATCAGGAGGCTGCAAGAGCGCGCTGATGAGCGAGCACGCAACATGAAGAAGTCACATAGCGTGAAGTTCAGCTGGATCTTTAACAAGGAAGTGCTTTTGTGA 1158 0.4914 MQMQISSLRTQTFLHFSPAQKYGRHIMPLPRAAAIAAPPPLKSKKTHSMAPEKIEIFKSLENWASECVLPMLKPVEQCWQPQNLVPDSSQPFDEFTDEVKNLRQRTAEIPDDYFVVLVGDMITEEALPTYQSMINNLDGVGDEIGSSPNPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMLMIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYQKIVEKLLEVDPSDAVVAIGDMMQKKITMPAHLMYDGSDPKLFEHFSAVAQRLGVYTANDYADILEFLVGRWRLEKLEGLTAEGKRAQDYVCGLSQRIRRLQERADERARNMKKSHSVKFSWIFNKEVLL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3456 385 Gene3D Ribonucleotide Reductase, subunit A 38 385 IPR012348 GO:0016491
Amo16g3456 385 PANTHER STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 6, CHLOROPLASTIC 27 384 - -
Amo16g3456 385 ProSitePatterns Fatty acid desaturases family 2 signature. 302 321 IPR005803 GO:0006633|GO:0016491
Amo16g3456 385 Pfam Fatty acid desaturase 52 379 IPR005067 GO:0006631|GO:0045300
Amo16g3456 385 SUPERFAMILY Ferritin-like 42 384 IPR009078 -
Amo16g3456 385 PIRSF Dlt9_acylACP_des 6 385 IPR005067 GO:0006631|GO:0045300
Amo16g3456 385 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 27 384 IPR005067 GO:0006631|GO:0045300
Amo16g3456 385 CDD Acyl_ACP_Desat 52 360 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3456 Amo-Chr16 143484733 143487019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3456 31 383 Acyl Lipid Metabolism Gene Families AT1G43800 77.247 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3456 K03921 - gmx:100037478 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3456 16 143484733 143487019 Amo16g3456 16 143484733 143487019 ECH