Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3172 ATGGCTTCCTCTGCCGAACGCGATAACCCAAGATCTGCAAAAAGAGTTGCTGTTGTTGGTGCCGGGGTAAGTGGGCTTGCTGCGGCTTACACATTGAAATCACATGGTCTGGATGTCACTGTATTCGAAGCTGAAGCAAGAGCTGGTGGGAGGTTAAAAAGTGTCTCACATGATGGTCTGGTTTGGGATGAGGGAGCTAATACAATGACTGCAAGTGAATTGGAGGTTAAAGAATTGATTGAAGCTCTTGGCCTTCAAGGAAAGCAACAGTTTCCAAACTCACAGCATAAGCGCTATATTGCGAAAAACGGAAAACCAGTTCTGGTACCAACAAATCCTGCTGCACTACTGAAGACGCAACTCCTGTCTGCACGCTCAAAGATCCAGCTAATTTTTGAACCATTTATGTGGAAGAGAAGTGACCCTTCTAGTGTGTGTGATGAAAATTACACAGAAAGCGTTGGTAGTTTCTTTGAACGTCATTTTGGGCAAGAGGTCGTGGACTATCTTATTGATCCTTTTGTAGGTGGTACAAGTGCAGCAGATCCGGAATCTCTTTCTATATGCCATACTTTCCCAGAGCTATGGGATTTGGAGAAGAGGTTTGGCTCCATTATAACTGGAGCTTTGAAGTCAAAGTTATTTTCTAAACCGGATAAAACTAGTCAAAGGAAGGTAAAGATTGCATCAAGAAAAGACAAGCACAAGCGTGGTTCATTTTCTTTCTTGGGTGGGATGCAGACACTGACTGATGCATTGTGCAAAGAGCTCGGTCAAGATGACCTTAAATTAAATTCAAAGGTTTTGACATTAGCGTACAATCATGATGGAAGTTCTTCATCACAAAATTGGTCTATTTCTTGTGCTTCCAACCAAAACATAGAAGGTGTTGATGCTGTAATTATGACGGCTCCCCTATGTAATGTCAAAGAGATGAAGATCACAAAAAGGGCAACCCCGTTCCCACTTAATTTTCTTCCTGAGGTGACCTATGTGCCACTCTCAGTCATAATCACCACCTTTAGAAAGGAGAATGTTAAGAGACCCCTTGAGGGATTTGGAGTTCTTGTTCCTTCAAAAGAGCAACAAAATGGTTTAAAAACTCTTGGTACACTTTTTTCCTCTATGATGTTTCCAGATCGTGCACCCAGTGATTTACATCTCTACACCACCTTTGTAGGGGGGACAAGAAACACAGATCTCGCAAAAGCTTCAACTGACGAGCTTAAGAGCATTGTGACTTCTGACCTGAGAAACTTGTTGGGAGCAGAGGGAGAGCCCACATTTGTCAACCATTTCTATTGGAGCAAAGGCTTTCCTTTGTATGGGCGTAACTATGCATCAGTTCTTCAAGCTATTGACAAAATGGAAAAGGATCTTCCTGGATTTTTCTATGCAGGTAACCACAAAGGTGGGCTCTCAGTTGGCAAAGCGATAGCCTCAGGTTGTAAAGCAGCTGATCTTGTTATCACTTACCTCAACTCTTCTTCAGAGAACAACATAGTACCTGATAAATGA 1518 0.4249 MASSAERDNPRSAKRVAVVGAGVSGLAAAYTLKSHGLDVTVFEAEARAGGRLKSVSHDGLVWDEGANTMTASELEVKELIEALGLQGKQQFPNSQHKRYIAKNGKPVLVPTNPAALLKTQLLSARSKIQLIFEPFMWKRSDPSSVCDENYTESVGSFFERHFGQEVVDYLIDPFVGGTSAADPESLSICHTFPELWDLEKRFGSIITGALKSKLFSKPDKTSQRKVKIASRKDKHKRGSFSFLGGMQTLTDALCKELGQDDLKLNSKVLTLAYNHDGSSSSQNWSISCASNQNIEGVDAVIMTAPLCNVKEMKITKRATPFPLNFLPEVTYVPLSVIITTFRKENVKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPSDLHLYTTFVGGTRNTDLAKASTDELKSIVTSDLRNLLGAEGEPTFVNHFYWSKGFPLYGRNYASVLQAIDKMEKDLPGFFYAGNHKGGLSVGKAIASGCKAADLVITYLNSSSENNIVPDK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3172 505 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 493 - -
Amo16g3172 505 SUPERFAMILY FAD/NAD(P)-binding domain 11 493 IPR036188 -
Amo16g3172 505 Pfam Flavin containing amine oxidoreductase 23 490 IPR002937 GO:0016491
Amo16g3172 505 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 493 - -
Amo16g3172 505 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 14 494 IPR004572 GO:0004729|GO:0006779
Amo16g3172 505 PRINTS Adrenodoxin reductase family signature 38 51 - -
Amo16g3172 505 PRINTS Adrenodoxin reductase family signature 15 37 - -
Amo16g3172 505 Gene3D protoporphyrinogen ix oxidase, domain 3 109 215 - -
Amo16g3172 505 Gene3D - 15 486 IPR036188 -
Amo16g3172 505 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 51 442 - -
Amo16g3172 505 SUPERFAMILY FAD-linked reductases, C-terminal domain 331 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3172 Amo-Chr16 135869573 135877389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3172 15 86 Acyl Lipid Metabolism Gene Families AT3G23530 36.486 4.29e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3172 K00231 - gmx:547941 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3172 16 135869573 135877389 Amo16g3172 16 135869573 135877389 ECH