Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3052 ATGGTAACTTCTCTTGCATCGATGGGGTTGAAGCCGAAGAAGAAGAGCGAGGGCGAGGAGGCGGCAGCAGCAGCACCACCACCGCCGCGAGCGTCGAAGCGGAGCAGTAGCAACCCTCCAGTGACGATGGATCACGTGCTGCTGGCGTCACAGGAGACGAAGGAGGCACGTGAGAGTCGTATTCGCGAGATGTTCGGGTTCTTCGACAAGGAGAATTGCGGTTACCTGGAATACGCACACATCGAGGCAGGGCTTTCGGCGCTTCAGATTCCTTCGGAGTACAAGTACGCCAGGGACCTTCTGAACGCTTGTGACAAGAACAAGGATGGGAGGGTGGACTACGATGAGTTCAAGAAGTACATGGATGAGAAGGAACTTGAGCTCTACCGCATTTTTCAAGCTATCGATGTCGAGCACAATGGATCCATTCTCCCTGAGGAGCTCTGGGAGGCACTTGTTAGAGCAGGGATCCAGATTGATGATAAGGAGCTCGCTCGTTTTGTTGAGCGTGTAGATAAGGATAACAATGGGGTTATAACATTTGAAGAATGGCGGGATTTTCTGCTGCTTTACCCTCATGAAGCAACTATGGAGAACATTTACCATTATTTGGAGAGGATATGCATGGTTGATATTGGGGAACAAACTGTTATACCTGCAGGCATTAGTAAGCACATTCATGCAAGTAGGTATTTGATTGCAGGAGGAGTAGCTGGTGCTGCATCACGCACAGCAACAGCCCCCCTTGATCGCCTAAAGGTTGTATTGCAAGTCCAGACAACACGAGCCCGTATAATGCCAGCTGTAAAAGATATATGGAAAGAAGGTGGTTTCTTAGGATTTTTTCGAGGCAATGGCTTAAACGTTCTTAAGGTTGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGCTGAAGACTGCCATTGTAAATGCTAGAGGAGAAGAGGTAAAGTCAGATGTTGGAACTATGGGCCGGCTGCTAGCTGGTGGTATAGCAGGCGCTGTTGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACACGACTACAAACCCATGCTTGTGAAGGTGGAAAGATTCCTAGTCTTGGAACTCTGTCCAGAGATATATGGGTTCAAGAAGGACCACGTGCATTTTATAGGGGACTGGTTCCTTCACTTCTGGGGATTATCCCGTACGCTGGTATAGATCTTGCTGCATATGAGACCTTGAAGGATATGTCCAAGAAGTATATTCTTCATGAAGGAGAACCTGGTCCTCTTGTGCAATTGGGATGTGGTACTATATCAGGAGCCCTTGGAGCGTCATGTGTTTACCCATTGCAGGTCATCAGAACAAGAATGCAGGCTCAAAGTACTTATAGTGGAATGGGTGATGTATTCAGGAAAACCATGAAACATGAAGGGTTTAGGGGATTCTACAAAGGAATATTCCCTAACCTACTCAAAGTGGTGCCATCGGCAAGTATCACTTACTTGGTCTATGAGTCTATGAAAAAGGGTTTGGATTTGGAGTGA 1524 0.4705 MVTSLASMGLKPKKKSEGEEAAAAAPPPPRASKRSSSNPPVTMDHVLLASQETKEARESRIREMFGFFDKENCGYLEYAHIEAGLSALQIPSEYKYARDLLNACDKNKDGRVDYDEFKKYMDEKELELYRIFQAIDVEHNGSILPEELWEALVRAGIQIDDKELARFVERVDKDNNGVITFEEWRDFLLLYPHEATMENIYHYLERICMVDIGEQTVIPAGISKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRARIMPAVKDIWKEGGFLGFFRGNGLNVLKVAPESAIRFYTYEMLKTAIVNARGEEVKSDVGTMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTHACEGGKIPSLGTLSRDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKKYILHEGEPGPLVQLGCGTISGALGASCVYPLQVIRTRMQAQSTYSGMGDVFRKTMKHEGFRGFYKGIFPNLLKVVPSASITYLVYESMKKGLDLE* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3052 507 PANTHER SOLUTE CARRIER FAMILY 25 68 504 - -
Amo16g3052 507 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Amo16g3052 507 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Amo16g3052 507 Pfam EF-hand domain pair 91 122 IPR002048 GO:0005509
Amo16g3052 507 Pfam EF-hand domain pair 127 186 IPR002048 GO:0005509
Amo16g3052 507 Gene3D - 139 214 - -
Amo16g3052 507 SUPERFAMILY EF-hand 52 226 IPR011992 -
Amo16g3052 507 Gene3D Mitochondrial carrier domain 222 504 IPR023395 -
Amo16g3052 507 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Amo16g3052 507 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
Amo16g3052 507 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Amo16g3052 507 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 68 504 - -
Amo16g3052 507 SUPERFAMILY Mitochondrial carrier 225 498 IPR023395 -
Amo16g3052 507 CDD EFh 60 121 IPR002048 GO:0005509
Amo16g3052 507 ProSiteProfiles Solute carrier (Solcar) repeat profile. 420 503 IPR018108 -
Amo16g3052 507 MobiDBLite consensus disorder prediction 1 41 - -
Amo16g3052 507 Gene3D - 8 128 - -
Amo16g3052 507 ProSiteProfiles EF-hand calcium-binding domain profile. 128 158 IPR002048 GO:0005509
Amo16g3052 507 SMART efh_1 96 124 IPR002048 GO:0005509
Amo16g3052 507 SMART efh_1 163 191 IPR002048 GO:0005509
Amo16g3052 507 SMART efh_1 60 88 IPR002048 GO:0005509
Amo16g3052 507 SMART efh_1 127 155 IPR002048 GO:0005509
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 244 258 IPR002067 GO:0055085
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 284 304 IPR002067 GO:0055085
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 382 400 IPR002067 GO:0055085
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 231 244 IPR002067 GO:0055085
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 429 451 IPR002067 GO:0055085
Amo16g3052 507 PRINTS Mitochondrial carrier protein signature 337 355 IPR002067 GO:0055085
Amo16g3052 507 ProSiteProfiles Solute carrier (Solcar) repeat profile. 322 409 IPR018108 -
Amo16g3052 507 Pfam Mitochondrial carrier protein 421 504 IPR018108 -
Amo16g3052 507 Pfam Mitochondrial carrier protein 321 412 IPR018108 -
Amo16g3052 507 Pfam Mitochondrial carrier protein 225 312 IPR018108 -
Amo16g3052 507 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 309 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3052 Amo-Chr16 132603595 132608202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3052 30 507 EF-hand Containing Proteins AT5G51050 70.041 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3052 K14684 - gmx:100775805 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3052 16 132603595 132608202 Amo16g3052 16 132603595 132608202 ECH
Amo16g3052 16 132603595 132608202 Amo06g2438 06 85876664 85881729 hybridization