Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3046 ATGGCTTCACTCCTTCCAACTCCACACTTTTCCACACCCCTTATCTCCAAGCTCACTTCTTCCCCCAAAACTTGGAAACTCTTCATCCTCCCCCACCCTTTATACCCTATAGCCCTTCACATCAAGAAGAAAAACGTACTTCTTTTTCCCACCAATGCATTCTATACGCAAGGGGTCTATGCCCCTTCTTCTTCCCCTTCCAAATTGGGGAACAGAACAGAGAAAAAGAATGAGCTTGAGAATGACTCAATTGCCTTGCTCAACGAGAGAATTCGTCGCGACTATGGCAGCAGGGAGGTCTCAAGAACTGTTATGGACTCAGAGGAGGCTGATAGGTACATACAGATGGTGAAGGAGCAGCAGCAGAAGGGGTTGCAGAAGCTGAAGGGTGAGAGGAAGGAAGGGAAAGATGGTACCTTCAGCTACAAGGTTGACCCTTATACGCTTCAATCCGGTGACTATGTTGTTCACAAGAAGGTTGGTATTGGGAGGTTTGTTGGGATCAGGTTGGATGTTCCAAAGAATTCTACAGAACCTACTGAATATGTTTTCATTGAGTATGCTGATGGGATGGCGAAGCTTCCTCTTAAGCAGGCATCGAAAATGCTCTATAGATATAGTCTTCCAAACGAGAACAAAAGACCTCGGACATTGAGCAAGTTAAATGATATTAGTAGTTGGGAGAAAAGAAAGATTAAGGGGAAGGTTGCGATACAGAAAATGGTCGTTGACTTGATGGAGCTCTATCTACATAGGCTCAAACAGAGAAGACCGCCGTACTCGAAAAGTCTTGCCATGACTGAATTTGCTGCTCAATTTCCTTATAAGCCTACACCTGATCAACAACAGGCTTTTATTGATGTTGAGAGGGATTTGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGCAAAACTGAGGTTGCACTACGTGCTATCCACTGTGTTGTGTCAGCGAAAAAGCAAGCAATGATTCTAGCACCAACTAGAGTTCTAGCAAAACAACATTTTGATGTTATATCTGAACGCTTTTCTGTATATCCTGATCTCAAAGTTGGACTACTAAGCAGGTTTCAGACCAGAGCAGAGAAAGAAGCACAATTGGACAAGATTAAGAATGGTGACCTGGACATTGTTGTTGGAACTCACTCGCTTCTTGGAGATCGTGTTGTATATAACAAACTTGGCCTGCTCGTGATTGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAGGATTGCTTCTTTTAAAACTTCGGTGGACGTACTTACTCTATCGGCAACCCCTATCCCGAGAACTCTCTATTTAGCCTTGACAGGGTTTCGTGATGCTAGTTTAATTACAACCCCACCTCCAGAAAGAGTTCCCATCAAGACTCACCTTTCTGCATTCAGTAAGGATAGAGTAATATCGGCCATCAAGTATGAGCTCGACCGTGGCGGTCAAGTTTTTTATGTTCTGCCACGTATTAAAGGACTTGAAGAAGTAATGTATTTTCTTGAAGAGTCATTCCCAGATGTTGAAATAGCCATTGCCCATGGGAAGCAATACTCAAGGCAATTAGAGGATACCATGGATAGATTTGCTTCAGGCGAAACAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCCAATACCATTATCATTCAAGATGTTCAACAATTTGGACTCGCACAGTTGTACCAGTTACGTGGAAGGGTTGGGCGAGCCGATAAGGAAGCACATGCACACTTATTTTACCCTGATAAAAGTATGCTCTCTGACCAAGCACTGGAGAGGCTTGCAGCTCTTGAAGAATGCCATGAGCTTGGTCAAGGATTCCAACTAGCCGAGCGAGACATGGCTATAAGAGGTTTTGGTACAATATTTGGTGAACAACAAACAGGAGATGTCGGAAATGTCGGCATTGATCTATTCTTTGAGATGCTCTTTGAGAGCTTGTCCAAGGTTGAAGATCACCGTGTAGTTCCGGTTCCTTATCACTCAGTGCAGACTAAAAATATGGTTCCACAAATCAAATCTGACAGATGA 2073 0.4317 MASLLPTPHFSTPLISKLTSSPKTWKLFILPHPLYPIALHIKKKNVLLFPTNAFYTQGVYAPSSSPSKLGNRTEKKNELENDSIALLNERIRRDYGSREVSRTVMDSEEADRYIQMVKEQQQKGLQKLKGERKEGKDGTFSYKVDPYTLQSGDYVVHKKVGIGRFVGIRLDVPKNSTEPTEYVFIEYADGMAKLPLKQASKMLYRYSLPNENKRPRTLSKLNDISSWEKRKIKGKVAIQKMVVDLMELYLHRLKQRRPPYSKSLAMTEFAAQFPYKPTPDQQQAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAIHCVVSAKKQAMILAPTRVLAKQHFDVISERFSVYPDLKVGLLSRFQTRAEKEAQLDKIKNGDLDIVVGTHSLLGDRVVYNKLGLLVIDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSAFSKDRVISAIKYELDRGGQVFYVLPRIKGLEEVMYFLEESFPDVEIAIAHGKQYSRQLEDTMDRFASGETKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLSDQALERLAALEECHELGQGFQLAERDMAIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVPVPYHSVQTKNMVPQIKSDR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3046 690 SMART ultradead3 273 465 IPR014001 -
Amo16g3046 690 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 680 - -
Amo16g3046 690 Pfam Helicase conserved C-terminal domain 479 584 IPR001650 -
Amo16g3046 690 CDD DEXHc_TRCF 266 456 - -
Amo16g3046 690 Gene3D - 148 663 IPR027417 -
Amo16g3046 690 Gene3D - 213 456 IPR027417 -
Amo16g3046 690 SMART helicmild6 501 585 IPR001650 -
Amo16g3046 690 Gene3D - 152 212 - -
Amo16g3046 690 SUPERFAMILY CarD-like 143 212 IPR036101 -
Amo16g3046 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 599 IPR027417 -
Amo16g3046 690 Pfam CarD-like/TRCF domain 149 249 IPR003711 -
Amo16g3046 690 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 16 680 - -
Amo16g3046 690 Pfam DEAD/DEAH box helicase 299 437 IPR011545 GO:0003676|GO:0005524
Amo16g3046 690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 454 IPR014001 -
Amo16g3046 690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 629 IPR001650 -
Amo16g3046 690 SMART CarD_TRCF_2 148 250 IPR003711 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3046 Amo-Chr16 132186285 132192499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3046 - - adu:107494618 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3046 16 132186285 132192499 Amo16g3046 16 132186285 132192499 ECH
Amo16g3046 16 132186285 132192499 Amo06g2419 06 85314889 85321508 hybridization