Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3036 ATGCCGCTATCCGCCGCCACAGCCGGCGCCTCACTGCCGCCCGCGCTAGAAGAGGATCCATCACCACAAGACGGCGACGGTTACGGCGTTATCGACATCCCCGGCGTTGTTTCACTTGACGAGGAGGGATTCCCGTCACAGATCCCTTACGAAGACTGTCCACCAAACACCGCCGGCGAACGATCGGCGACATCGGCAGGAAAGAGCAGCTTCGCCGCCGATTTCTATAGCTGCGGTGCCGATTGGTCCTCGCTGTTGTCGCCGGAGGATCGCAGACACAGCGGCGGTTTCGGTTCGGTTCATTCGGCGAAGAAGTTGAAGCAGGCAAATTTGTTTCAGGTTTGGGGATTCAAACGAAACGGCGCCGCCGAATCTGATTCGGCTTCGTCTATTGAATCTTGCAAACCTAACCAATGTGATTCTTTTACCGGTGGAGGCGAAAGCGTTGGTTCTTCTGAGAGAAAGATCGTGAAACCTGAGAATTTGGGTTCGATTTTGCGCGATACGGGGAAAGAGTTCGAGAAATCAAAATCTTCTCATAAGAGAAAGGAAAGCCATGAAGGAGTTAGAGTGACGCGTACCTGTCCCTTTTATAAGAAAATTCCAGGGACAAGCTTCACTGTTGATGCATTCCGTTATGGGTGTATTGAAGGGTGCTCTGCATACTTTCTTAGTCACTTCCATTCCGATCATTATGGCGGCCTTAGCAAGAAATGGTCACATGGCCCCATTTATTGCTCTCCTCTTACAGGAAGGCTTGTTCAAATGTGTCTCTCGGTAAATCCCTTGTACATCCACCCTTTGGAATTTAATGTTGAATATGTGGTTTGTGGTGTCAAAGTAACTTTGTTGGAAGCTAATCATTGCCCTGGTGCAGCGTTGATTCACTTTGGCCTCTCAAATGGGCAATGTTATTTGCATACCGGAGACTTTAGAGCTTGTAAACAAATGCAAGCTTACCATACCCTTGTAAATCAACATGTGAATGTCCTTTACTTAGACACTACATATTGCAACCCAAAGTACAATTTCCCTTCCAAGGAAGACGTACTCAATTATGTTGTCAAAGTTACAAAGAACCAACTTAAAGTGCATCCCAAAACTTTGGTGGTTGTTGGAGCGTATAGTATTGGCAAAGAGTGTGTATATCTTGCAATTTCTAAGGCTCTTGGGGTAAAAATTTATGCAAATGCTTCAAGAAGGAAAATTTTGCTGGCTTTTGGTTGGTCTGAGCTTTCTGATAGTCTGTGTATTAATGGAAATAACACATTTCTCCATGTTCTTCCCATGTCATCTCTCAGATTGGAGTCTTTAAAGGATTACATGAAGACCTACAAGGAAAAATACACAGCAGTATTGGCATTTCGTCCAACAGGTTGGACTTTCAGCGAAAAGATTCGCAATGATCTAGAACTAATTAAACCTATTTCCAAAGGAAATATCACAATATATGGTAACATGAGCTGCTGTGCTGCAATTGAACAGCCAACCTTCATATAG 1500 0.4493 MPLSAATAGASLPPALEEDPSPQDGDGYGVIDIPGVVSLDEEGFPSQIPYEDCPPNTAGERSATSAGKSSFAADFYSCGADWSSLLSPEDRRHSGGFGSVHSAKKLKQANLFQVWGFKRNGAAESDSASSIESCKPNQCDSFTGGGESVGSSERKIVKPENLGSILRDTGKEFEKSKSSHKRKESHEGVRVTRTCPFYKKIPGTSFTVDAFRYGCIEGCSAYFLSHFHSDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNVEYVVCGVKVTLLEANHCPGAALIHFGLSNGQCYLHTGDFRACKQMQAYHTLVNQHVNVLYLDTTYCNPKYNFPSKEDVLNYVVKVTKNQLKVHPKTLVVVGAYSIGKECVYLAISKALGVKIYANASRRKILLAFGWSELSDSLCINGNNTFLHVLPMSSLRLESLKDYMKTYKEKYTAVLAFRPTGWTFSEKIRNDLELIKPISKGNITIYGNMSCCAAIEQPTFI* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3036 499 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 88 486 - -
Amo16g3036 499 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 88 486 - -
Amo16g3036 499 Gene3D - 201 342 IPR036866 -
Amo16g3036 499 Pfam DNA repair metallo-beta-lactamase 412 484 IPR011084 -
Amo16g3036 499 CDD SNM1A-1C-like_MBL-fold 185 340 - -
Amo16g3036 499 SUPERFAMILY Metallo-hydrolase/oxidoreductase 217 463 IPR036866 -
Amo16g3036 499 Gene3D - 343 465 - -
Amo16g3036 499 MobiDBLite consensus disorder prediction 1 65 - -
Amo16g3036 499 MobiDBLite consensus disorder prediction 168 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3036 Amo-Chr16 131965382 131968595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3036 K15340 - gmx:100790844 691.034