Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3017 ATGGGCGCGAGCAGTGACCCGACCCAAGACGGTTCCGACGAGCAGCAAAAGCGTTCGGAGATCTACACCTACGAAGCTCCATGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAGAAGTACCGCCTCGCCATCGCTTCTTTACTGGAACAGTACCCTAACAAGGTCGAGATCGTCCAGCTCGACGACTCCACCGGCGAGATCCGTTCCGATCCCGCCCTCTCCTTCGAGCACCCCTACCCTCCCACCAAAGCCATCTTCATCCCCGACAAGGACTGCTCCCGCCCCGACCTCCTCGCCACCTCCTCCGACTTCCTCCGCGTCTGGCGCCTCCCTGACTCCACCAACTCCGACGACGCCGCCACCACCACCGCCAACAACAACGGCAACGGCTCCCGCGGCGGTGGCGGTGGGGTTGAGCTTAAGAGTCTCCTGAACGGGAACAAGAACAGCGAGTTCTGCGGGCCGCTGACGTCATTCGATTGGAACGAGGCGGAGCCACGGCGGATCGGGACGTCGAGCATTGACACGACGTGCACGATTTGGGATATTGAGAAGGAGGCTGTGGATACGCAGCTTATTGCGCATGATAAGGAGGTGTATGATATTGCCTGGGGTGGTGTTGGGGTTTTCGCTTCCGTTTCTGCTGATGGTTCTGTTAGGGTTTTTGATCTTCGCGATAAGGAGCATTCCACCATTATTTACGAGAGCTCTGAGCCTGATACTCCTTTGGTTCGCCTCGGCTGGAACAAGCAGGATCCTAGGTACATGGCTACCATCATAATGGATAGTGCCAAGGTTGTGGTGCTTGATATTCGTTTTCCGACACTTCCAGTTGTCGAGTTGCAGAGGCACCAGGCAAGTGTGAATGCCATTGCTTGGGCGCCACATAGTTCTTGCCATATCTGTACAGCTGGGGATGACTCACAGGCTTTGATTTGGGACCTTTCTTCGATGGGTCAGCCTGTGGAGGGTGGTTTGGACCCGATTCTTGCGTACACGGCTGGTGCAGAGATTGAGCAGCTTCAGTGGTCATCTTCTCAGCCAGATTGGGTTGCCATTGCTTTCTCCACCAAGCTTCAGATTCTGAGGGTTTGA 1104 0.5616 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNKVEIVQLDDSTGEIRSDPALSFEHPYPPTKAIFIPDKDCSRPDLLATSSDFLRVWRLPDSTNSDDAATTTANNNGNGSRGGGGGVELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKEAVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3017 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 320 IPR001680 GO:0005515
Amo16g3017 367 MobiDBLite consensus disorder prediction 118 135 - -
Amo16g3017 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 320 - -
Amo16g3017 367 SMART WD40_4 277 317 IPR001680 GO:0005515
Amo16g3017 367 SMART WD40_4 71 112 IPR001680 GO:0005515
Amo16g3017 367 SMART WD40_4 140 185 IPR001680 GO:0005515
Amo16g3017 367 SMART WD40_4 188 226 IPR001680 GO:0005515
Amo16g3017 367 Gene3D - 13 366 IPR015943 GO:0005515
Amo16g3017 367 SUPERFAMILY WD40 repeat-like 74 325 IPR036322 GO:0005515
Amo16g3017 367 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Amo16g3017 367 PANTHER WD REPEAT CONTAINING PROTEIN 13 367 IPR045159 -
Amo16g3017 367 Pfam WD domain, G-beta repeat 284 317 IPR001680 GO:0005515
Amo16g3017 367 Pfam WD domain, G-beta repeat 195 226 IPR001680 GO:0005515
Amo16g3017 367 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3017 Amo-Chr16 131367422 131370069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3017 K11805 - gmx:100818850 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3017 16 131367422 131370069 Amo16g3017 16 131367422 131370069 ECH
Amo16g3017 16 131367422 131370069 Amo06g2380 06 84343524 84346201 hybridization