LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g2954	ATGAATGCATTAGTAGCTACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTTGGATTGGACTCAAAGCTTGAGAAAAGTTTATTGATTCCATTCAGGGAAATCAAGGTTGAATGCACCATACCTAAAGATGATGGCACATTAGCATCATATGTTGGGTTCAGGGTTCAACATGACAATGCTAGAGGCCCTATGAAAGGAGGAATCAGATACCATCCTGAGGTTGATCCAGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACTGCGGTAGCAAATATACCGTATGGTGGCGCCAAAGGAGGAATAGGGTGTAACCCATCAGAACTAAGTCTCTCTGAGTTAGAAAGGCTAACTAGAGTTTTCACACAGAAAATCCATGATTTGATTGGAATTCACACTGATGTGCCTGCACCCGATATGGGAACAGGACCACAGACAATGGCATGGATACTAGACGAGTATTCGAAATTTCATGGTTATTCTCCTGCAGTTGTGACTGGAAAACCGATAGATCTTGGTGGATCTCTAGGCAGAGAAGCAGCCACAGGAAGAGGAGTCCTCTATGCAACAGAGGCTGTGCTTAATGAGTATGGAAAGAATGTATCTGGACAACGGTTTGTCATACAGGGTTTCGGAAATGTGGGATCTTGGGCTGCCCAATTAATTAGCGAGAGAGGTGGAAAGGTTATTGCTGTGAGTGATGTAACTGGAGCCATAAAGAACAACAATGGCCTTGACATCCCAAGCTTACTCAAGCATTCCAAAGAGCACAAAGGAGTTAAAGGATTCCATGGTGGTGATTCCATTGATCCTAAGTCAATATTAGTTGAAGACTGTGATGTTCTGATTCCAGCAGCTCTTGGGGGTGTCATTAATAGGGAAAATGCAAATGAAATCAAAGCCAAATTTATTATTGAAGCAGCCAATCACCCCACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGAGTTGTGATCCTTCCAGACATATATGCAAATTCAGGAGGTGTTACAGTTAGTTACTTTGAGTGGGTTCAGAACATCCAAGGGTTCATGTGGGATGAAGAGAAAGTGAACAATGAGCTAAAGAAGTACATGACAAGAGGGTTCAAAGATGTGAAAGAAATGTGCAAGACTCATGAATGCGATCTTCGAATGGGAGCCTTCACTCTTGCAGTTAACCGTGTTGCAAGGGCCACTGTCCTTAGGGGTTGGGAAGCTTGA	1236	0.4312	MNALVATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPSELSLSELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGREAATGRGVLYATEAVLNEYGKNVSGQRFVIQGFGNVGSWAAQLISERGGKVIAVSDVTGAIKNNNGLDIPSLLKHSKEHKGVKGFHGGDSIDPKSILVEDCDVLIPAALGGVINRENANEIKAKFIIEAANHPTDPEADEILKKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKKYMTRGFKDVKEMCKTHECDLRMGAFTLAVNRVARATVLRGWEA*	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g2954	411	PIRSF	Glu_DH	1	411	IPR014362	GO:0016639
	Amo16g2954	411	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	6	178	IPR046346	-
	Amo16g2954	411	CDD	NAD_bind_1_Glu_DH	176	402	IPR033922	GO:0016639
	Amo16g2954	411	PANTHER	BNAA05G37230D PROTEIN	1	405	-	-
	Amo16g2954	411	Pfam	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	33	159	IPR006097	GO:0006520\|GO:0016491
	Amo16g2954	411	Gene3D	Leucine Dehydrogenase, chain A, domain 1	33	175	-	-
	Amo16g2954	411	PANTHER	GLUTAMATE DEHYDROGENASE	1	405	-	-
	Amo16g2954	411	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	176	409	IPR036291	-
	Amo16g2954	411	ProSitePatterns	Glu / Leu / Phe / Val dehydrogenases active site.	96	109	IPR033524	-
	Amo16g2954	411	Gene3D	-	176	410	-	-
	Amo16g2954	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	88	102	IPR006095	GO:0006520\|GO:0016491
	Amo16g2954	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	167	189	IPR006095	GO:0006520\|GO:0016491
	Amo16g2954	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	209	229	IPR006095	GO:0006520\|GO:0016491
	Amo16g2954	411	PRINTS	Glutamate/leucine/phenylalanine/valine dehydrogenase signature	336	347	IPR006095	GO:0006520\|GO:0016491
	Amo16g2954	411	Pfam	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	176	408	IPR006096	GO:0006520\|GO:0016491
	Amo16g2954	411	SMART	ELFV_dehydrog_3	178	408	IPR006096	GO:0006520\|GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g2954	Amo-Chr16	128993700	128996982	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g2954	1	296	EF-hand Containing Proteins	AT5G07440	79.392	1.35e-180	503

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g2954	K00261		-	gmx:100789509	781.941

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g2954	16	128993700	128996982	Amo16g2954	16	128993700	128996982	ECH
	Amo16g2954	16	128993700	128996982	Amo06g2247	06	80008571	80012372	hybridization
	Amo16g2954	16	128993700	128996982	Amo20g3625	20	146781598	146785621	PCT
	Amo20g3625	20	146781598	146785621	Amo16g2954	16	128993700	128996982	PCT