Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2745 ATGGCCACCAAGTTGCTTCTGAAGAGAGCAAGAGCAAGTCTCTCTAGGTCCTTCTCGCAATTCTCACCTTCTTCTTTCCGGATTCTCTATGTTAAAGCTTCATCAGAAATCTTTGGTAAAATGTGCCACAACGCGCATCTTCCACCCCCGCCGCTATCACCTTCTTCCAGAACCTTCTGTTCTCGCAGTTCGAAACTTCTAGATGAATCTCAGGGCCCCGCCGCCATTGATTACCGTTCTCTACTGCAGGAGGGTGAATTTCACAATCTTGCTGATTCCACTATACATAGCCTACAGGAGAAACTTGAGGATTACGGAGATGATGTTGAAGTTGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTAAAACTCGGCAATCTGGGCACCTATGTCTTGAACAAACAAACACCAAATAGGCAACTTTGGTTGTCTTCTCCTGTAAGTGGCCCCTCAAGGTTTGATTGGGATCAAGGGAGTAAAGTTTGGATTTATAGACGGAACAAAGCAAACTTGTACGAAGTTTTAGAAACTGAGTTGGAGCAGCTGTGTGGCAAACCTATTGTTCTCTCCTAA 582 0.4433 MATKLLLKRARASLSRSFSQFSPSSFRILYVKASSEIFGKMCHNAHLPPPPLSPSSRTFCSRSSKLLDESQGPAAIDYRSLLQEGEFHNLADSTIHSLQEKLEDYGDDVEVDGFDIDYGNDVLTVKLGNLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDQGSKVWIYRRNKANLYEVLETELEQLCGKPIVLS* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2745 193 SUPERFAMILY Frataxin/Nqo15-like 72 190 IPR036524 GO:0008199|GO:0016226
Amo16g2745 193 TIGRFAM mito_frataxin: frataxin 86 183 IPR017789 GO:0004322|GO:0005739
Amo16g2745 193 PRINTS Frataxin signature 82 100 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 PRINTS Frataxin signature 120 135 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 PRINTS Frataxin signature 135 150 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 CDD Frataxin 82 190 - -
Amo16g2745 193 ProSiteProfiles Frataxin family profile. 82 190 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 Pfam Frataxin-like domain 83 189 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 TIGRFAM FeS_CyaY: iron donor protein CyaY 84 191 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 PANTHER FRATAXIN 27 191 IPR002908 GO:0008199|GO:0016226
Amo16g2745 193 ProSitePatterns Frataxin family signature. 134 148 IPR020895 -
Amo16g2745 193 Gene3D Frataxin/CyaY 75 193 IPR036524 GO:0008199|GO:0016226
Amo16g2745 193 SMART Frataxin_Cyay_2 82 193 IPR002908 GO:0008199|GO:0016226
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2745 Amo-Chr16 121509021 121514080 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2745 K19054 - gmx:100815916 253.062