Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2389 ATGGCATCCAAGGCCGTGGCCGTGGCAGCTGAGAAGGTTGGTAGGGCGGCGCGCCGTCAGGCCGTTACCTTAACGGACACCGCCGCCTCCCGTGTACGGCAGCTTCTTGAACAGCGCCAGAGGTCCTTCCTCAAGCTCGGTGTCAAGGCTCGTGGTTGTAACGGCTTATCCTACACTCTCAACTACGCAGATGAAAAAGGGAAGTTTGATGAGTTGGTTGAGGATAAAGGTGTCAAGATACTGATTGATCCAAAGGCCCTTATGCATGTCATCGGAACAAAGATGGATTTTGTAGATGACAAACTCAGATCAGAGTTTATTTTTGTCAATCCAAACTCCAAAGGCCAGTGTGGTTGCGGTGAATCTTTCATGACATCAAGTAGTGGAGGAGCTAAGCCATGA 402 0.5025 MASKAVAVAAEKVGRAARRQAVTLTDTAASRVRQLLEQRQRSFLKLGVKARGCNGLSYTLNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFVNPNSKGQCGCGESFMTSSSGGAKP* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2389 133 PANTHER IRON-SULFUR CLUSTER ASSEMBLY PROTEIN 3 131 - -
Amo16g2389 133 SUPERFAMILY HesB-like domain 21 114 IPR035903 -
Amo16g2389 133 Gene3D - 21 127 IPR035903 -
Amo16g2389 133 PANTHER IRON-SULFUR ASSEMBLY PROTEIN ISCA-LIKE 3, MITOCHONDRIAL 3 131 - -
Amo16g2389 133 Pfam Iron-sulphur cluster biosynthesis 22 121 IPR000361 -
Amo16g2389 133 TIGRFAM TIGR00049: iron-sulfur cluster assembly accessory protein 22 124 IPR016092 GO:0016226|GO:0051536
Amo16g2389 133 ProSitePatterns Hypothetical hesB/yadR/yfhF family signature. 106 123 IPR017870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2389 Amo-Chr16 101173234 101176013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2389 K22063 - gmx:100792861 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2389 16 101173234 101176013 Amo16g2389 16 101173234 101176013 ECH
Amo16g2389 16 101173234 101176013 Amo06g1686 06 58166787 58169434 hybridization