Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2334 ATGGTTTACACCGTCTCGGGGATTCGGTTCCCCTCGGTTCCTTCGTTGCAGAAATCGTCGCAGCTGAGCTTCCACGATCGAAGGAGCGCTTCGTTCTCATTTCTCCTGAACAGGAACTCCTTCTCTCGGAAAAGTCTCGCTGTAAAATGTTCCCATGATTCTGACTTGTCATCTTCCACGGTTGCTGAATCTGATAAAGTACTTATTCCTCAAGGTCACGATAACTCTTCAACCACGACTGATGAAGTTGAAGCTCCTGATATAACTTCAGAGGATCCGCAGAAAATACAAGAGTTAACCATGAAAGGTGAGAAAATTGATTATGAAGCAGTTAGCACTGACAAAGATGACAAGGATGGGCAAGGTCATGTTTTGTCATCACATGTGGATGTTGACACCAATACTCAAGCTGAGAATACATCAGTATCTATAAACAAGAAAGTGAAGGTCGAAAGTGAGGAAGCTAGACCAAAGATCATTGCCCCACCTGGCACTGGTCATAAAATATATGAGATTGATCCATCTTTGCAAGCTCACCGTGCTCATCTTGACTTCCGTTATGGACAATATAAGAGATTGCATGAAGAAATTAACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCACCCGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCAACGTCAGCAGCATTAATTGGAGATTTCAACAACTGGAATCCAAARGCAGATGTAATGACTCGGAATGAGTTTGGTGTATGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACTGCCAATTCCTCATGGTTCTCGAGTCAAGATCCGCATGGAAACTCCGTCTGGAATCAAAGATTCAATCCCTGCTTGGATAAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGTATATACTATGATCCACCAGAAGAGGAAAAATATGTCTTCAAATATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAATCACATGTTGGAATGAGTAGTTCGGAACCAAAAATCAATACGTATGTCAACTTTAGAGATGAAGTGCTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATTCAAGAGCATTCTTATTATGCTAGCTTTGGGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGGTTTGGAACTCCGGATGATCTCAAGTCTCTCATAGACAAAGCCCATGAATTAGGCCTGCTTGTTCTGATGGATATTGTACATAGTCATGCATCAAATAATACACTGGATGGGCTGAACATGTTTGATGGAACTGATACTCATTACTTCCATGGTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGTCTTTTTAACTATGGAAGCTGGGAGGTTCTAAGGTATCTGCTTTCAAATGCAAGATGGTGGCTGGAAGAATATAAGTTTGATGGGTTTCGATTTGATGGTGTCACATCAATGATGTATACTCATCATGGATTGGGGGTTGGTTTTACTGGAAATTACAATGAGTACTTCGGTTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTTAATGATGTCATTCATGGGCTCTTTCCTGAGGCTGTTACTATTGGTGAAGATGTCAGTGGAATGCCAACATTTTGCCTTCCTACACAAGATGGTGGGGTTGGCTTTGACTACCGCCTGCACATGGCCATAGCAGACAAGTGGATTGAGATTCTCAAGAAGAAAGATGAAGACTGGGAAATGGGTGATATAGTTCACACTCTCACAAACAGAAGGTGGCTAGAAAAATGTGTAGCATATGCTGAAAGTCATGACCAAGCTTTGGTTGGGGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCCTTAGATAGACCATCTACTCCTCTCATAGATCGTGGTATAGCACTACACAAGATGATTAGGCTTATCACAATGGGTCTTGGTGGGGAAGGGTATTTGAATTTTATGGGGAATGAATTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGTGCAGTAATTCCCGGGAATAATTACAGTTATGATAAATGTAGGCGTAGATTTGACTTGGGGGATGCAGACTATCTTAGATATAGGGGGATGCAAGAATTTGATCAGGCTATGCAGCATCTGGAAGAAAGGTTTGGTTTCATGACTTCTGAACACCAATATATTTCTCGGAAACATGAGGGTGACAAAGTTATAGTGTTCGAAAGGGGCAAACTTGTATTTGTCTTCAATTTTCATTGGTACAACAGCTATTCAGATTACAGAGTTGGATGCTTAAACCCAGGGAAATACAAGATTGTCTTGGATTCAGATGATCCCTTGTTTGGTGGCTTCAACAGACTCAATCCCACAGCCGAGTACTTCACCTCTGATGGATGGTATGACGGCCGACCCCGATCTTTTCTCGTGTATGCACCTTCTAGAACAGCTGTGGTGTATGCCCTCGCAGATGAAGCTGAGCCAGAGCCAACGCTAAAACCAGTTGAAGTCCTAAAACCAGTTGAAGTGCTAGTGATGGAACCAGAGCTAGAGCCAGAGCCAAAGCAAGTGCTAGAGTCAGAGTCAAAGCCAGAGCCAGTTGAAGCAGAAGTTGAACCCTGA 2691 0.427 MVYTVSGIRFPSVPSLQKSSQLSFHDRRSASFSFLLNRNSFSRKSLAVKCSHDSDLSSSTVAESDKVLIPQGHDNSSTTTDEVEAPDITSEDPQKIQELTMKGEKIDYEAVSTDKDDKDGQGHVLSSHVDVDTNTQAENTSVSINKKVKVESEEARPKIIAPPGTGHKIYEIDPSLQAHRAHLDFRYGQYKRLHEEINKYEGGLDAFSRGYEKFGFTRSATGITYREWAPGATSAALIGDFNNWNPKADVMTRNEFGVWEIFLPNNVDGSLPIPHGSRVKIRMETPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKYPQPKRPKSLRIYESHVGMSSSEPKINTYVNFRDEVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDTHYFHGGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLGVGFTGNYNEYFGFATDVDAVVYLMLVNDVIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLHMAIADKWIEILKKKDEDWEMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPTGAVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEERFGFMTSEHQYISRKHEGDKVIVFERGKLVFVFNFHWYNSYSDYRVGCLNPGKYKIVLDSDDPLFGGFNRLNPTAEYFTSDGWYDGRPRSFLVYAPSRTAVVYALADEAEPEPTLKPVEVLKPVEVLVMEPELEPEPKQVLESESKPEPVEAEVEP* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2334 896 MobiDBLite consensus disorder prediction 54 91 - -
Amo16g2334 896 SMART aamy 352 712 IPR006047 GO:0005975
Amo16g2334 896 Gene3D Immunoglobulins 209 321 IPR013783 -
Amo16g2334 896 CDD E_set_GBE_euk_N 221 314 - -
Amo16g2334 896 Gene3D Glycosidases 173 742 - -
Amo16g2334 896 SUPERFAMILY (Trans)glycosidases 326 740 IPR017853 -
Amo16g2334 896 PIRSF GlgB 80 854 IPR037439 GO:0003844|GO:0005978
Amo16g2334 896 Pfam Alpha amylase, C-terminal all-beta domain 751 844 IPR006048 GO:0003824|GO:0005975|GO:0043169
Amo16g2334 896 CDD AmyAc_bac_euk_BE 318 733 - -
Amo16g2334 896 MobiDBLite consensus disorder prediction 54 84 - -
Amo16g2334 896 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 213 296 IPR004193 GO:0004553|GO:0005975
Amo16g2334 896 SUPERFAMILY E set domains 207 316 IPR014756 -
Amo16g2334 896 MobiDBLite consensus disorder prediction 873 896 - -
Amo16g2334 896 Gene3D - 747 853 IPR013780 -
Amo16g2334 896 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 4 850 - -
Amo16g2334 896 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 4 850 IPR037439 GO:0003844|GO:0005978
Amo16g2334 896 Pfam Alpha amylase, catalytic domain 362 434 IPR006047 GO:0005975
Amo16g2334 896 SUPERFAMILY Glycosyl hydrolase domain 747 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2334 Amo-Chr16 98082183 98098555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2334 29 847 Glycoside Hydrolase AT5G03650 75.639 0.0 1300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2334 K00700 - gmx:100816963 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2334 16 98082183 98098555 Amo16g2334 16 98082183 98098555 ECH
Amo16g2334 16 98082183 98098555 Amo06g1626 06 54613560 54629581 hybridization