Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2033 ATGGCCTCATCATCAATAATATTGCTCGTTCTTGTTACATTTGCTATTCGTGATGCACATGCAAGCGTAAATTCATGGAGTTATGCAGCTCATAATAACATAGTTGGACGTAGTACATTGGCTATTTTCAATCATCAACAACGCCCTAAGTTTGTATCTGGCCAATGGATGCAAGCTCATGCTACCTTTTATGAAGGAGGTTCCGGCACATATGGAGGAGCTTGTGGGTATGAGGATGTGGTTAAAGACGGTTATGGGATGGAGATAGCAGCATTGAGCACAGTTATGTTTAAAGGTGGTGAAGCATGCGGTGGATGCTACGAGATCAAATGTGCATCAGATTCAACTCAAGGATGCAATAATGCAGGAAGAGGACAATCCTCCATCTTTGTAACCGCAACAAACCTTTGCCCCCCAAACTACAATCAAGCAAGTAATAATGGAGGATGGTGCAACTCTCCACGAGAGCACTTTGATTTGGCCAAACCTACATTCCTCAAAATTGCTCAGTACAAGACCGGCATTGTCCCAGTTCAATACCGCAGAGTACCATGCAAGAAATGGGGAGGAATCAGGTACACCATAACTGGGAATCCTTACTTTAATCTAGTCAAAGTGTGGAATGTTGGAGGTGCTGGGGATGTGGTGGGAGTTCAAGTGAAGGGTGATACGAAGCTCAAATGGATAGAATTAAAGCGAAATTGGGGCCAAAAATGGGAGACAAAAGCTATGTTAGTCGGAGAATCATTAACATTTAGGGTCAAAGCAAGTGATGGAAGGTACTCCACCTCATGGCATGTCGCCCCCAAGAATTGGCAGTTTGGTCAGACTTTTGAAGGCAAAAACTTCAAATAA 855 0.4339 MASSSIILLVLVTFAIRDAHASVNSWSYAAHNNIVGRSTLAIFNHQQRPKFVSGQWMQAHATFYEGGSGTYGGACGYEDVVKDGYGMEIAALSTVMFKGGEACGGCYEIKCASDSTQGCNNAGRGQSSIFVTATNLCPPNYNQASNNGGWCNSPREHFDLAKPTFLKIAQYKTGIVPVQYRRVPCKKWGGIRYTITGNPYFNLVKVWNVGGAGDVVGVQVKGDTKLKWIELKRNWGQKWETKAMLVGESLTFRVKASDGRYSTSWHVAPKNWQFGQTFEGKNFK* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2033 284 Gene3D - 40 186 IPR036908 -
Amo16g2033 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 190 IPR007112 -
Amo16g2033 284 Pfam Expansin C-terminal domain 191 269 IPR007117 -
Amo16g2033 284 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Amo16g2033 284 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Amo16g2033 284 PRINTS Expansin/Lol pI family signature 173 189 IPR007118 GO:0005576
Amo16g2033 284 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Amo16g2033 284 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Amo16g2033 284 SUPERFAMILY Barwin-like endoglucanases 55 208 IPR036908 -
Amo16g2033 284 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 129 139 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 148 165 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 165 178 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 189 201 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Amo16g2033 284 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Amo16g2033 284 Pfam Lytic transglycolase 90 180 IPR009009 -
Amo16g2033 284 SUPERFAMILY PHL pollen allergen 189 280 IPR036749 -
Amo16g2033 284 Gene3D - 190 283 IPR036749 -
Amo16g2033 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 280 IPR007117 -
Amo16g2033 284 PANTHER EXPANSIN-A32 10 284 - -
Amo16g2033 284 PANTHER EXPANSIN-A15 10 284 IPR002963 GO:0009664
Amo16g2033 284 SMART dpbb_1 89 180 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2033 Amo-Chr16 66578169 66579956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2033 51 284 Miscellaneous Gene Families AT5G02260 60.593 4.72e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2033 - - gmx:100800424 402.905