Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1851 ATGGAATCCGCCAAAACAATGTTTATTACATCTCCACCCTTCCCTCCAAGAACTCTCCTTTCTTCTACCTCTTCGGCTTCAGTTCTGATGCTTCATGAACAAGCTGCACCTTTAGTTGCTTCTTGGTCTTCAAGTTTTGCTGCTCAGCATTTTCCTACCTCTGTTCTCTCGCAAGAGCAGCGTGATGAGTATAAGCCTCTGCTTCACTTGTATAAGGAAGATAAGAACTCTCAGGTTACATCAAATACAAGAAATGTGGATACGGGCTTGGTCCGCGATAATGATAGCAATGATAATGCTGATCAGTTAGTGCATCACTTTAGGCAGCAGTTGCAACTCTGGTCACATTTGCAGAATGTATTGAAATCCTCAACAGGGGAAACTGCTGCTGCTTCATCTCTGCAGCCCGAAAGAGTTGATTCAGATAGACCTGCAGATGGTTTGCAATTTGATGCAGTATCCCTCTCTAAGCAAGCTCTGTCGGCCGCAAAACAAGCAGCATTAGTGGCTGAAGAGATGAAAATGATTGAAGATGACGAAGATGATGATCCACTTCCTCTTGGTCTGGCTTCCACAAGCTTAGCTGACACTTCAATTGGAAAGAATAAAATTGTGCGGTCAAGAAGGCTTCTAGAAAGGAGATTGAAGCAAAGAAAAGTTTCAAAATCAAAATTTCTTGATGAAGAAAGTTATCTTGCAAGAAAATCAGACCTACAGGGAAGGCTACAAGTAGAAAAGAAGATAAAGGAAGGATTCGATCAAAATGATCCCCTGCGCTTGTTCTTGTGGGGTCCTGAGACAAAGAAACTTTTGACCTCTGAAGAAGAGTCTCAATTGTTTGTTCAGCTACAGGATTTTCTGAGATTAGAAGAAGTAAAGATCAGGCTCCAATCTCAATTTGGACGGGAACCAACTTTGATTGAATGGGCTGAAGGTGTGGGTCTTAGCTGCCATGCCCTGCAGACACAGATCCATCATGGTAACATAATCAGAGGAAAGATAATTAATGCCAATTTACGGATGGTTGTTCATATTGCTAAACAGTATCAGGGTCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGACTTATGAAGAGTGTTGAAAGGTTTAAACCACGAGTTGGTTGCCGGTTTGGTACCTATGCATACTGGTGGATAAGGCAAACAATTAGAAAGGCCATATTTCTACATTCCAGGTCAATCCGTCTGCCGGAGAGTTTATATACCCTTTTGGGCAAGGTCATGGAAGCAAAGAAATTATTCATTCAAGAAGGAAATCTTCACCCCAGTAAAGAAGAATTAGCAGAAAGGGTAGGAATTACGGTAGAAAAGTTTGAAAAGTTGTTATTTTCTGCAAGAATACCAATATCAATGCAGCAACCTGTGTGGGCAGACCAAGATACAACTTACCAGGAAATTACTGCAGATAGTGCAATTGAGATCCCAGGCTTGAGTGTCGAAAAAGAGCTTATGAGGAGGCACGTGCGCAACCTCCTAAGCAACTTAAGCCCAAAGGAGAAGAGGATAGTCAGTCTAAGATTTGGTATCGAGGATGGCCGCGAGAAATCTCTGCAAGAAATTGGAAACGTACTTGGTTTGACAAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCACTGAAGAAGCTCAAGCAGTGCCTTGAGAGCGAAGGACTTCATGCATATATGGACTTGATTGTATAG 1713 0.4273 MESAKTMFITSPPFPPRTLLSSTSSASVLMLHEQAAPLVASWSSSFAAQHFPTSVLSQEQRDEYKPLLHLYKEDKNSQVTSNTRNVDTGLVRDNDSNDNADQLVHHFRQQLQLWSHLQNVLKSSTGETAAASSLQPERVDSDRPADGLQFDAVSLSKQALSAAKQAALVAEEMKMIEDDEDDDPLPLGLASTSLADTSIGKNKIVRSRRLLERRLKQRKVSKSKFLDEESYLARKSDLQGRLQVEKKIKEGFDQNDPLRLFLWGPETKKLLTSEEESQLFVQLQDFLRLEEVKIRLQSQFGREPTLIEWAEGVGLSCHALQTQIHHGNIIRGKIINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVERFKPRVGCRFGTYAYWWIRQTIRKAIFLHSRSIRLPESLYTLLGKVMEAKKLFIQEGNLHPSKEELAERVGITVEKFEKLLFSARIPISMQQPVWADQDTTYQEITADSAIEIPGLSVEKELMRRHVRNLLSNLSPKEKRIVSLRFGIEDGREKSLQEIGNVLGLTKERVRQLESRALKKLKQCLESEGLHAYMDLIV* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1851 570 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 570 - -
Amo16g1851 570 CDD Sigma70_r4 496 554 - -
Amo16g1851 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 407 480 IPR013324 -
Amo16g1851 570 Gene3D - 59 403 - -
Amo16g1851 570 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 570 - -
Amo16g1851 570 Pfam Sigma-70 region 3 415 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 Gene3D - 484 567 IPR036388 -
Amo16g1851 570 PRINTS Major sigma-70 factor signature 382 390 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 PRINTS Major sigma-70 factor signature 506 518 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 PRINTS Major sigma-70 factor signature 542 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 PRINTS Major sigma-70 factor signature 358 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 PRINTS Major sigma-70 factor signature 527 542 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 ProSitePatterns Sigma-70 factors family signature 2. 527 553 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 ProSitePatterns Sigma-70 factors family signature 1. 358 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 Pfam Sigma-70 region 2 335 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 465 566 IPR013324 -
Amo16g1851 570 PIRSF Sigma_factor_SigC 4 570 IPR016262 -
Amo16g1851 570 Pfam Sigma-70, region 4 502 555 IPR007630 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 331 557 IPR014284 GO:0003700|GO:0006352|GO:0006355
Amo16g1851 570 Gene3D - 407 483 IPR036388 -
Amo16g1851 570 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 254 403 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1851 Amo-Chr16 45490800 45494695 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1851 - - aip:107648612 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1851 16 45490800 45494695 Amo16g1851 16 45490800 45494695 ECH
Amo12g3381 12 122969206 122972907 Amo16g1851 16 45490800 45494695 PCT