Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1616 ATGGGTCAGGGAACTCCGGGCGGTCTCAACCGGCAGGGCATGCCGGGGGACAGGAAGCCAGACAGCGGCGACAAGAAGGACAAGAAGTTCGAGCCGGCGGCGCCGCCAGCTCGCGTTGGCAGGAAACAGCGGAAGCAGAAGGGGCCCGAGGCGGCGGCGCGGCTTCCGACGGTGACGCCGGTTTCGAAGTGCAAGCTGAGGCTGCTGAAGCTGGAGAGGATTAAGGACTACCTTCTGATGGAGGAGGAGTTCGTGGCCAACCAGGAGCGACTGAAGCCGCAAGAGGAGAAGGCTGAAGAGGACCGATCCAAGGTCGATGACCTTCGCGGTTCGCCCATGTCCGTTGGAAACTTGGAGGAGCTCATCGATGAGAATCATGCAATCGTTTCGTCATCGGTTGGCCCTGAGTACTATGTTGGAATCTTGTCTTTTGTCGATAAGGATCAGCTTGAACCCGGTTGCGCCATCTTGATGCATAACAAGGTTCTATCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCAGTCATGAAGGTTGAGAAAGCTCCTTTGGAATCCTACGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCTCTCACGCATCCTGAACTGTACGAAGACATTGGTATCAAACCACCTAAGGGGGTCATTTTATATGGAGAACCTGGAACTGGAAAGACCTTGCTTGCAAAGGCTGTTGCAAACTCAACATCAGCAACATTTTTAAGAGTTGTTGGTAGTGAATTAATACAAAAATACTTGGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCCGGGTAGCTGATGATCTCTCCCCTTCAATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGCGAAATTCAAAGGACTATGTTGGAGCTTCTTAATCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAGGTGATCCTTGCAACCAACAGAATTGAAAGCCTTGATCCAGCTCTATTGAGACCTGGTCGAATAGACAGGAAGATAGAGTTTCCCCTCCCTGACATCAAAACCAGGAGACGCATTTTCCAGATACACACATCAAGGATGACATTAGCTGATGATGTGAACTTAGAAGAATTTGTTATGACTAAGGATGAGTTTTCAGGGGCTGATATAAAAGCAATATGCACTGAAGCTGGCTTACTTGCTCTACGAGAGCGCCGAATGAAGGTAACACATGCCGACTTTAAGAAGGCAAAGGATAAAGTGATGTTCAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTAA 1341 0.4787 MGQGTPGGLNRQGMPGDRKPDSGDKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPVSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1616 446 Pfam AAA+ lid domain 383 427 IPR041569 -
Amo16g1616 446 Gene3D - 113 180 IPR012340 -
Amo16g1616 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Amo16g1616 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Amo16g1616 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 31 446 - -
Amo16g1616 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Amo16g1616 446 MobiDBLite consensus disorder prediction 1 56 - -
Amo16g1616 446 MobiDBLite consensus disorder prediction 91 110 - -
Amo16g1616 446 MobiDBLite consensus disorder prediction 17 35 - -
Amo16g1616 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Amo16g1616 446 CDD AAA 194 361 - -
Amo16g1616 446 Gene3D - 366 440 - -
Amo16g1616 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 81 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
Amo16g1616 446 MobiDBLite consensus disorder prediction 91 108 - -
Amo16g1616 446 Gene3D - 181 361 IPR027417 -
Amo16g1616 446 SMART AAA_5 224 363 IPR003593 -
Amo16g1616 446 PANTHER BNAA08G13550D PROTEIN 31 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1616 Amo-Chr16 30383207 30388271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1616 189 431 Miscellaneous Gene Families AT3G47060 44.355 3.93e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1616 K03062 - gmx:100798835 867.455