Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1540 ATGAAGCGCAATTCATTCATTCACATCTTCAAGCTTTGCCAAATTGTTGTAGTGGCCTTCATTGTAATGACGATTTTCTTCCGTACTAATATGCATCGAGATTCTGTGGTCGATGGTGGTATATATGTTGGTGCAATGTACTATTGCATTCTTCTGATTGTGCTAAATGGATTTGCTGATCTTACTGTGACAATTTCTAAGCTTCCTATGTTTTACAAGCAAAGAAACCTTCTCTTCTTCCCTTCATGGGTATATGTTCTCCCTGAGTGGATCCTAAAGCTTCCCATAACTTTCACAGAAGTGGGAATTTGGGTATTTCTTACTTACTATGTAATTGGTTTTGATCCAGATGTTGGAAGATTCTTTAGGCAATTCCTTCTTCTTGTACTTGTTAACCAGATGGCTACTGCCGTATTCCGATTTATTGCAGCACTTGGTAGTAAAGTGGCTTTCACAATTGGCTCATTTACATTGAGCATCCTTGTTATAGTGAGTGGTTTCATCTTGTCAAAAGATAATATGAAAAAATGGTGGTTATGGGGATTTTGGGCATCGCCTATGATGTATGGACAGAATGCCATTGTAAATAATGAGTTTCTAGGCAAGAAATGGAGACACGTTCTGCCTAACTCCACAAAACCACTAGGAATTGAAGTTTTGAAGTCCCGCGGATTCTTCACACAGTCAAATTGGTATTGGATAGGTGTTGGGGCATTGATTGGATATACAATAGTGTTCAACATTGGTTACATCCTTGCTCTTGCTTTCTTGAGTCCAATTGTGCAACAACATGGTGTTAAGTCAGAGCAATCGAAAAGCAATGAGCAGAATCATGGAGGTAACAATGCTCAAAAAGAAGGTGGAGTGGAGAACAATCATAACAGAAAGACAGGAATTATTCTTCCTTTTGAACCATGTGCCGTTACATTTGATGAAATAACTTATTCTGTTGATATGCCACAGGAAATGAGGATCCATGGTGTTCTTGAGGACAGATTATGCCTTTTAAAGGGTATCAACGGCACTTTTCGGCCCGGGGTTCTTACTGCTCTAATGGGTGTTACTGGTGCTGGCAAAACAACTTTGATGGATGTACTCTCTGGTAGAAAAACTGGTGGATATATCGGCGGAAGCATCACGGTTTCTGGTTATCCAAAGAATCAAGAAACCTTTGCAAGAATTTCTGGATACTGTGAACAAAATGATATCCACTCGCCAAACGTCACTGTATATGAATCATTGGTCTACTCAGCATGGCTTAGATTGTCTGCCGAAATCAATGCTGAAACCAGGAAGATGTTCATTGAAGAAGTCATGGAACTTGTGGAGCTGAATCTAATAAGGAATGCAATAGTTGGATTGCCAGGTGTTAACGGTCTCTCAATGGAGCAGCGCAAAAGGTTGACTATTGCAGTTGAGTTGGTGGCTAATCCTTCTATAATATTCATGGATGAACCAATTTCTGGGCTTGATGCAAGGGCTGCTATCATTGTTATGAGAGCAGTTAGGAACATAGCAGATACCGGAAGAACAGTAGTTTGCACCATTCATCAACCTTGCAGTGATATATTTGAATCTTTTGATGAGCTTTTCCTAATGAAAGTAGGAGGACAAGAAATATATGTGGGGCCACTTGGATACCATTGTTCTCATTTAATCAATTACTTTGAGGAAATACAAGGTGTCAGCAAGATTAAAGATGGTTATAATCCAGCTACATGGATGTTGGAAGTAACTTCTTTAGCAAAAGAAATGGAATTGGGAATTGATTTTGCTCAGGAGTACAAAAATTCATCGCTATATAGGAGAAACAAAGAACTTATTAATGAATTAAGTATCCCAGTTCAAGGTTCTAAGGACCTTTATTTTCCTTCCAAGTATTCGAGGTCCTTTTTCACACAATGCATGGCTTGCTTATGGAAGCAACATTGGTCTTATTGGCGCAATCCTCCATACACTGCTATAAGATTTCTCTACACCATCGCTGTTGCCCTGTTGTTTGGAACCGTCTTTTGGAACCTTGGCTCCAAAATTGAAAAACGACAAGATCTTTTCAATGCTATGGGATCCATGTATGCTGCTGTTCTTCTTCTTGGTATTAGGAATTCTAGTTCAGCACAACCATTGGTGTTCGTGGAAAGAACAGTGTTCTATAGGGAAAAAGCTGCTGGCATGTACTCAGCTTTTGCATATGCTTTTTCTCAGGTTGTGATTGAACTCCCTTATGTCCTTTTACAAGCTGTGGTGTATGGCATTATAGTTTATGCAATGATTGGTTTTGAGTGGACAGTCACTAAGATTTTCTGGTACTTATTCTTTATGTACTTCACTTTCTTGTACTTCACCTATTATGGCATGATGGCTGCAGCAATGACCCCAACTCCACCAATTGCTGTTATACTTTCATCTGGATTCTATCAAGTGTGGAATCTTTTCTCAGGATTCGCAATTCCACGACCAAGAATTCCTGTGTGGTGGAGATGGTATTATTGGGGAAATCCAGTAGCTTGGACTTTGTATGGATTGGTGGCATCGCAATTTGGAGACATGCAAGACACGATAGCGTTCAATGGCAAACCTACAACAGTAGAAGACTTCTTGAGAAATTATTTTGGTTTCAAGCACGATTTTTTAGGAGTGGTTGGAGTTGTAATTATAGGGTTTGCAGTTACTTTTGCATTGGTCTTTGCCATTGCCATTAAGATGTTTAACTTCCAACGACGCTAA 2727 0.3949 MKRNSFIHIFKLCQIVVVAFIVMTIFFRTNMHRDSVVDGGIYVGAMYYCILLIVLNGFADLTVTISKLPMFYKQRNLLFFPSWVYVLPEWILKLPITFTEVGIWVFLTYYVIGFDPDVGRFFRQFLLLVLVNQMATAVFRFIAALGSKVAFTIGSFTLSILVIVSGFILSKDNMKKWWLWGFWASPMMYGQNAIVNNEFLGKKWRHVLPNSTKPLGIEVLKSRGFFTQSNWYWIGVGALIGYTIVFNIGYILALAFLSPIVQQHGVKSEQSKSNEQNHGGNNAQKEGGVENNHNRKTGIILPFEPCAVTFDEITYSVDMPQEMRIHGVLEDRLCLLKGINGTFRPGVLTALMGVTGAGKTTLMDVLSGRKTGGYIGGSITVSGYPKNQETFARISGYCEQNDIHSPNVTVYESLVYSAWLRLSAEINAETRKMFIEEVMELVELNLIRNAIVGLPGVNGLSMEQRKRLTIAVELVANPSIIFMDEPISGLDARAAIIVMRAVRNIADTGRTVVCTIHQPCSDIFESFDELFLMKVGGQEIYVGPLGYHCSHLINYFEEIQGVSKIKDGYNPATWMLEVTSLAKEMELGIDFAQEYKNSSLYRRNKELINELSIPVQGSKDLYFPSKYSRSFFTQCMACLWKQHWSYWRNPPYTAIRFLYTIAVALLFGTVFWNLGSKIEKRQDLFNAMGSMYAAVLLLGIRNSSSAQPLVFVERTVFYREKAAGMYSAFAYAFSQVVIELPYVLLQAVVYGIIVYAMIGFEWTVTKIFWYLFFMYFTFLYFTYYGMMAAAMTPTPPIAVILSSGFYQVWNLFSGFAIPRPRIPVWWRWYYWGNPVAWTLYGLVASQFGDMQDTIAFNGKPTTVEDFLRNYFGFKHDFLGVVGVVIIGFAVTFALVFAIAIKMFNFQRR* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1540 908 MobiDBLite consensus disorder prediction 267 288 - -
Amo16g1540 908 CDD ABCG_PDR_domain2 305 543 IPR034003 -
Amo16g1540 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 544 IPR027417 -
Amo16g1540 908 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 908 - -
Amo16g1540 908 Pfam ABC transporter 336 487 IPR003439 GO:0005524
Amo16g1540 908 MobiDBLite consensus disorder prediction 267 294 - -
Amo16g1540 908 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 308 561 IPR003439 GO:0005524
Amo16g1540 908 SMART AAA_5 345 546 IPR003593 -
Amo16g1540 908 Pfam ABC-2 type transporter 633 847 IPR013525 GO:0016020|GO:0140359
Amo16g1540 908 Pfam ABC-2 type transporter 1 199 IPR013525 GO:0016020|GO:0140359
Amo16g1540 908 Pfam Plant PDR ABC transporter associated 204 264 IPR013581 -
Amo16g1540 908 Gene3D - 325 550 IPR027417 -
Amo16g1540 908 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1540 Amo-Chr16 28485111 28497845 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1540 K08711 - gmx:100813417 1471.06