Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0882 ATGGAAACTAGCGCTTCAATGGATGTCGAGGAACAACCACCTTCACCAACACCCAACAACCTTAAACGTTTCGGCATTAAAAACTCTATTCAAACCAACTTCGGCGACGACTACGTTTTCCAAATTGTCCCAAAGGATGATTGGAGTTCAATGGCGGTGTCATTGTCAACGAACACAGTGAAGCTGTATTCACCATTGGCGGGTCAATACTTTGGAGAGTGCAACGGTCACTCTGCAACCATCAACCAGATTCTGTTTTCGGGTGCTTCCGATCCCAATGTTTTGAGCTCTTGTTCTTCTGATGGAACTATTAGAGCTTGGGACACAAGGACATTTCAGCAGGTTTCTTCCATCAATGCCGGCTTGTCTCAACAGGTCTTCAGCTTCTCTTATGGAGGGCCTGGGGGGAATTTAATAGCTGCTGGCTGTAAATCGCAGATACTCTTTTGGGACTGGAGAAATAAGAAGCAGATTGCATGCCTTGAAGAATCTCATGTGGATGATGTTACCCAGGTTCATTTTGTCCCTGATGAGCAAAGCAAGCTTATTTCTGCTTCAGCAGATGGGTTGATCTGCACATTCGATACCTCTGGAAATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATCGCAAAGGTCGGGATATTTGGAGGGAGCAGTCCAAAGCTTTGGTGTTTGACGCATATTGAAACCCTAGGTATATGGGACTGGAAAGATGGTAGAAATGAAGTTATCTTCTCGGATGCTCGAACTCTAGCTTCTGAAAGTTGGAATTTGGATCAGATAGACTATTTTGTTGATTGTCACTACTCAAGAGAAGCTGACAAATTATGGCTGATTGGTGGCACCAATGCTGGGACTTTGGGTTATTTTCCTGTAAATTACAGGGGAGTGGCAGCAGTTGGAGCTGCAGAAGCGATTCTTGAAGGTGGCCATACTGATGTTGTTAGGAGTGTGTTACCAATGTCAAGAAATCACAGTGGATTTGCTCCTAGTTCTTCTAACCAAGGTGTTTTTGGATGGACTGGCGGCGAAGATGGTCGGCTATGCTGCTGGCTCTCTGATGATTCCCCCCAAATAAATCAATCATGGATTTCAAGCTCATTGATTATGAAATCCGACAAGACTCGCAAGAAAAATCGTCACCAACCCTACTAG 1176 0.4413 METSASMDVEEQPPSPTPNNLKRFGIKNSIQTNFGDDYVFQIVPKDDWSSMAVSLSTNTVKLYSPLAGQYFGECNGHSATINQILFSGASDPNVLSSCSSDGTIRAWDTRTFQQVSSINAGLSQQVFSFSYGGPGGNLIAAGCKSQILFWDWRNKKQIACLEESHVDDVTQVHFVPDEQSKLISASADGLICTFDTSGNINDDDHLESVINMGTSIAKVGIFGGSSPKLWCLTHIETLGIWDWKDGRNEVIFSDARTLASESWNLDQIDYFVDCHYSREADKLWLIGGTNAGTLGYFPVNYRGVAAVGAAEAILEGGHTDVVRSVLPMSRNHSGFAPSSSNQGVFGWTGGEDGRLCCWLSDDSPQINQSWISSSLIMKSDKTRKKNRHQPY* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0882 391 Gene3D - 44 127 IPR015943 GO:0005515
Amo16g0882 391 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Amo16g0882 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 74 117 IPR001680 GO:0005515
Amo16g0882 391 SUPERFAMILY WD40 repeat-like 39 326 IPR036322 GO:0005515
Amo16g0882 391 SMART WD40_4 307 359 IPR001680 GO:0005515
Amo16g0882 391 SMART WD40_4 67 108 IPR001680 GO:0005515
Amo16g0882 391 SMART WD40_4 154 195 IPR001680 GO:0005515
Amo16g0882 391 SMART WD40_4 111 151 IPR001680 GO:0005515
Amo16g0882 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 74 111 - -
Amo16g0882 391 Pfam WD domain, G-beta repeat 69 108 IPR001680 GO:0005515
Amo16g0882 391 Gene3D - 128 383 IPR015943 GO:0005515
Amo16g0882 391 PANTHER UNCHARACTERIZED 21 391 IPR039328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0882 Amo-Chr16 14117833 14120988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0882 K24758 - gmx:100787377 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0882 16 14117833 14120988 Amo16g0882 16 14117833 14120988 ECH