Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0881 ATGGAGGTGATGCGTCACTGTTCAAGGTTCCTTCTTCCTCCCAACAGCAACGATACTCGTTGTATGAGGTACGCTCTTGTGGTCCTCAATCAACGTCTTCCTAGATTCGCTGCTCTCCTTTGGGACCACGCGCAGGTGCGAGTGTGTGCTGATGGAGGTGCCAACAGGGTGTTTGATGAAATGCCTCTTCTCTTCCCTCTTCAACATCCTTCCCAAGTTCGCTCCAGGTACAAGCCAGATGTAATCAAAGGCGACATGGATTCTATCAGGAAAGATGTCCTTCATTTCTATACAAACCTTGGGACAAAGATACTTGATGCTTCTCATGATCAGGATACTACCGATTTGCACAAATGTGTAGCATACTTACGTGACCTAACAACACCAAATACTGATGAATCAGCTTTGTGTATTCTTGTTGCTGGAGCTCTTGGTGGGAGATTTGACCATGAGATGGGAAATATCAATGTTCTCTGCCGATTCTCCAGCACACGAATTATCCTTCTATCTGATGATTGCCTTATTCAGCTTCTTCCAAAGAATCACCGCCATGAGATAGTTATTCAATCTTCCGTCGAGGGTCCGCATTGTGGACTTATTCCCATTGGGATGCCATCTGCAAGTTCTACCACCACCGGACTCCAGTGGGACCTCAATGACACGGAGATGAAATTTGGAGGTTTAATAAGCACCTCAAATATTGTAAAAGGGGATATTGTAACAGTAGAGTCTGATTCAGATCTTCTTTGGACTATTTCTATCAAGAAACTGTAG 774 0.4457 MEVMRHCSRFLLPPNSNDTRCMRYALVVLNQRLPRFAALLWDHAQVRVCADGGANRVFDEMPLLFPLQHPSQVRSRYKPDVIKGDMDSIRKDVLHFYTNLGTKILDASHDQDTTDLHKCVAYLRDLTTPNTDESALCILVAGALGGRFDHEMGNINVLCRFSSTRIILLSDDCLIQLLPKNHRHEIVIQSSVEGPHCGLIPIGMPSASSTTTGLQWDLNDTEMKFGGLISTSNIVKGDIVTVESDSDLLWTISIKKL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0881 257 SMART TPK_B1_binding_a_2_a 182 248 IPR007373 GO:0009229|GO:0030975
Amo16g0881 257 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 18 174 IPR036759 GO:0004788|GO:0005524|GO:0009229
Amo16g0881 257 TIGRFAM thi_PPkinase: thiamine pyrophosphokinase 26 252 IPR006282 GO:0004788|GO:0006772
Amo16g0881 257 CDD TPK 25 252 IPR007371 GO:0004788|GO:0005524|GO:0009229
Amo16g0881 257 Gene3D Thiamin pyrophosphokinase, catalytic domain 24 165 IPR036759 GO:0004788|GO:0005524|GO:0009229
Amo16g0881 257 Pfam Thiamin pyrophosphokinase, catalytic domain 38 166 IPR007371 GO:0004788|GO:0005524|GO:0009229
Amo16g0881 257 PANTHER THIAMINE PYROPHOSPHOKINASE 1 3 255 - -
Amo16g0881 257 PANTHER THIAMIN PYROPHOSPHOKINASE 3 255 - -
Amo16g0881 257 PIRSF TPK1 1 257 IPR016966 GO:0004788|GO:0005524|GO:0009229
Amo16g0881 257 Gene3D - 166 256 - -
Amo16g0881 257 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 177 256 IPR036371 GO:0009229
Amo16g0881 257 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 183 249 IPR007373 GO:0009229|GO:0030975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0881 Amo-Chr16 14113412 14116164 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0881 K00949 - gmx:100786303 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0881 16 14113412 14116164 Amo16g0881 16 14113412 14116164 ECH