Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0876 ATGGCTGTAGTTGGAGTCGGTGTGCAGCAACAGTTTTTGTGTTCCTCTGAATCAAAGTGGAGCATTCCAACTACGCCATGCAATCCCCTTACGAACTCCATTCTCATACGCCCATTCAAAAAGATTCAATTTTCAGTCATTTCATGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACCACCGTCACAGGCCGCAGAAGCTGAAACTCAAACTGCTGAATCTTGCGTCAATTTAGGTCTTCAGCTCTTCTCCAAAGGAAGGGTTAAGGATGCTTTAGCCCAGTTTGAAACAGCGCTTACCTTGAATCCCAATCCTGTGGAGGCCCAAGCTGCTTTCTACAACAAAGCTTGCTGCCACGCATACAGAGGGGAAGGAAAGAAAGCTGCCGATAGTCTCCGTATTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCTTTTAGAGCTTTGCCTGAGTTCAAAGAACTACAAGAAGAGGCCAGGATAGGTGGGGAAGATATTGGCAACAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAGGCACCGTTTCGTGGGGTTAGGAGGTTTTTTTATGTGGCATTCACAGCAGCTGCAGGAATATCATTGTTCTTCACTCTACCCAGGCTAATCCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTACTGGAAACTGCAGGGAATGCTGCCATTAACATTGGAGGCATTGTTGCTTTTGTGGCATTATTTTTTTGGGACAATAAAAAGGAGGAGGAGCAGATTGAACAAATATCTCGAGATGAGACACTATCAAGGCTGCCTTTGCGCTTAACAACTAATCGTGTAGTTGAACTTGTTCAGCTACGGGACACAGTTAGGCCGGTTATATTAGCTGGGAAAAAAGAAACAGTATCTTTGGCTTTGCAAAGAGCAGAACGATTTCGCACTGAGCTCGTTAGACGTGGTGTCCTGTTAGTTCCTGTCATATGGGGAGAAGGTAGGGAAACCAAAACAAAAACAAAAATTGAGAAGAAAGGTTTTGGTCGTCCACAAAAGGCTGCTGAAGCTCTTCCGTCCATTGGGGAAGATTTTGATAAGCGAACACAGTCCATAGCTTCAAAATCAAAGTTGAAAGCAGAAATCAGGTTCAAGGCTGAAGTTGTATCGCAAGCAGAATGGGAACAGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTACTGTTGGCGAAGACGTGTACATAATAATGCGCTTAGATGGGAGGATTCGAAGATCGGGGAAAGGAATGCCTGACTGGCAGCAAATTGTGAAGGAGCTACCAGAAATGGAAGCATTTTTAAGCAAGCTAGAAAGATGA 1371 0.4398 MAVVGVGVQQQFLCSSESKWSIPTTPCNPLTNSILIRPFKKIQFSVISCSSSSSSSSSSSSPPSQAAEAETQTAESCVNLGLQLFSKGRVKDALAQFETALTLNPNPVEAQAAFYNKACCHAYRGEGKKAADSLRIALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGNSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTLPRLIRAIQGGDGAPDLLETAGNAAINIGGIVAFVALFFWDNKKEEEQIEQISRDETLSRLPLRLTTNRVVELVQLRDTVRPVILAGKKETVSLALQRAERFRTELVRRGVLLVPVIWGEGRETKTKTKIEKKGFGRPQKAAEALPSIGEDFDKRTQSIASKSKLKAEIRFKAEVVSQAEWEQWIRDQQKSEGVTVGEDVYIIMRLDGRIRRSGKGMPDWQQIVKELPEMEAFLSKLER* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0876 456 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 456 - -
Amo16g0876 456 Pfam Tetratricopeptide repeat 74 106 IPR013105 -
Amo16g0876 456 Gene3D Tetratricopeptide repeat domain 52 153 IPR011990 GO:0005515
Amo16g0876 456 ProSiteProfiles TPR repeat profile. 74 107 IPR019734 GO:0005515
Amo16g0876 456 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 41 456 - -
Amo16g0876 456 SUPERFAMILY TPR-like 66 140 IPR011990 GO:0005515
Amo16g0876 456 SMART tpr_5 74 107 IPR019734 GO:0005515
Amo16g0876 456 Pfam Low psii accumulation1 / Rep27 182 259 IPR021883 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0876 - - gmx:100784188 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0876 16 14069040 14072209 Amo16g0876 16 14069040 14072209 ECH