LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0875	ATGGCCACCGTAATCGACGGCAAGGCGGTGGCGCAAACTATCAGATCTGAGATCGCGGAGGAAGTGCGCGCCCTCTCTCAAAAGTACGGCAAGGTTCCGGGGTTGGCGGTGGTGATAGTAGGGAACAGGAAGGACTCGCAGAGTTACGTGGGAATGAAGAGAAAGGCGTGTGCTGAATTAGGGATTAAGTCCTTCGACATTGACCTTCCCGAACAAGTTTCCGAATCCGATTTGATTAAGCAAGTTCACCAGCTCAATGTTAACCCTGATGTTCACGGTATATTGGTTCAACTTCCATTGCCAAAGCATATCAATGAAGAGAAAGTTCTCAGCGAAATCAGCCTTGGGAAGGATGTGGATGGCTTCCATCCTCTCAACATTGGAAAGCTTGCAATGAAAGACAGAGATCCACTCTTCCTTCCTTGCACTCCCAAGGCATGTATCGAACTCTTATCGCGAAGTGGTGTAAGTATAAAGGGAAAGAAAGCAGTGGTGGTTGGTAGAAGCAACATAGTTGGATTACCAGCTTCATTGCTGCTTTTGAAAGCAGATGCAACGGTTACTATTGTCCATTCTCGCACAACTCAACCGGAAAGTATCATACGCGAAGCTGATATTGTTATCGCCGCAGCAGGGCAGCCGATGATGATCAAGGGAAGTTGGATCAAGCCTGGAGCTGCAGTGATCGATGTTGGCACAAATGCTGTCGATGACCCGACGAAGAAGTCTGGTTACAGGCTTGTTGGTGACGTAGATTTTGAGGAAGCATCTAAAGTAGCTGGTTGGATTACTCCTGTTCCTGGTGGTGTTGGTCCAATGACTGTCACAATGTTGCTGCATAATACTCTCGAGGGTGCCAAGCGCTGCTTTGAGAAGAACCACTGA	885	0.4802	MATVIDGKAVAQTIRSEIAEEVRALSQKYGKVPGLAVVIVGNRKDSQSYVGMKRKACAELGIKSFDIDLPEQVSESDLIKQVHQLNVNPDVHGILVQLPLPKHINEEKVLSEISLGKDVDGFHPLNIGKLAMKDRDPLFLPCTPKACIELLSRSGVSIKGKKAVVVGRSNIVGLPASLLLLKADATVTIVHSRTTQPESIIREADIVIAAAGQPMMIKGSWIKPGAAVIDVGTNAVDDPTKKSGYRLVGDVDFEEASKVAGWITPVPGGVGPMTVTMLLHNTLEGAKRCFEKNH*	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0875	294	Hamap	Bifunctional protein FolD [folD].	2	290	IPR000672	GO:0004488
	Amo16g0875	294	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	122	287	IPR036291	-
	Amo16g0875	294	CDD	NAD_bind_m-THF_DH_Cyclohyd	117	287	IPR020631	GO:0004488
	Amo16g0875	294	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	5	120	IPR020630	GO:0004488
	Amo16g0875	294	PANTHER	C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED	1	292	-	-
	Amo16g0875	294	PANTHER	C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC	1	292	-	-
	Amo16g0875	294	ProSitePatterns	Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1.	75	100	IPR020867	GO:0003824
	Amo16g0875	294	Gene3D	Leucine Dehydrogenase, chain A, domain 1	7	284	-	-
	Amo16g0875	294	Gene3D	-	5	266	-	-
	Amo16g0875	294	ProSitePatterns	Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2.	267	275	IPR020867	GO:0003824
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	33	55	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	74	101	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	109	130	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	156	176	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	205	234	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	246	262	IPR000672	GO:0004488
	Amo16g0875	294	PRINTS	Tetrahydrofolate dehydrogenase/cyclohydrolase family signature	263	281	IPR000672	GO:0004488
	Amo16g0875	294	SUPERFAMILY	Aminoacid dehydrogenase-like, N-terminal domain	1	121	IPR046346	-
	Amo16g0875	294	Pfam	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	123	288	IPR020631	GO:0004488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0875	Amo-Chr16	14066972	14069017	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0875	-		-	ahf:112756387	571.237

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g0875	16	14066972	14069017	Amo16g0875	16	14066972	14069017	ECH